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The map label for this gene is recO

Identifier: 148268050

GI number: 148268050

Start: 1726697

End: 1727443

Strand: Reverse

Name: recO

Synonym: SaurJH9_1624

Alternate gene names: 148268050

Gene position: 1727443-1726697 (Counterclockwise)

Preceding gene: 148268051

Following gene: 148268048

Centisome position: 59.43

GC content: 32.66

Gene sequence:

>747_bases
ATGCGCCAAAAAGGGATTATCATCAAAGCAGTTGATTATGGTGAATCTGATAAAATTATCACGATTTTAAATGAGCATGG
TGCAAAAGTACCACTTATGGCAAGGCGTGCTAAAAAAGTTAAGACGGGTTTACAAGCGCAAACGCAATTGTTTGTTTATG
GTTTGTTTATTTACAATCAGTGGCGAGGTATGGGAACGTTAAATTCTGTAGATGTTATTAGTCAACATTATAAATTACAA
ATGGACCTTTACGTAAGCAGTTATGCCTCTCTGGCAGCTGAAACTATTGAGCGCTCAATGGATGAAGGTGACATTGCACC
ATATAACTATCAATTATTACAATTTGTTCTTGAAAAAATAGAATCAGGTACATCTGCACAGTTAATGTCAGTCGTAGTTA
TGTTAAAGTGCATGAAACGATTTGGTTTTACTGCATCATTTAATCGCTGTGCTGTGAGTGGTAATGACACACAAGCAGAT
TTAATAGGTTATAGTTTTAAGTTTGACGGTGCGATTTCAAGGCAAGAGGCTTCTAAAGATGTACATGCAGTTATATTATC
GAATAAAACACTATATTTATTAGATGTATTACAAAAATTACCGATAGATAAAATGAATTCATTGAATATCCATCAAGAAA
TTATTGATGAAATGTCAGATATCATTTTAATGTTATATCGTGAATATGCAGGTATGTTTTTTAAAAGTCAGAAACTAATC
AACCAATTAAAAAGATTGGAACAATAA

Upstream 100 bases:

>100_bases
CAAAGTTCAAAGAGACTGGCGAAACAAAGTTAACTTTATTCGCCAAATTGGTTATGTTGAAGACCAAGATTAATCTTAAA
AGTGGTGAAGATAATTGTTA

Downstream 100 bases:

>100_bases
CATAAAATAATAAAAGGTATTCAAGTAGCCACATAGATGTGTTTATTTGAATACCTTTTTGAATAGAAAAGAGATACTGG
CAATTTTACTAACCAGTATC

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIYNQWRGMGTLNSVDVISQHYKLQ
MDLYVSSYASLAAETIERSMDEGDIAPYNYQLLQFVLEKIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQAD
LIGYSFKFDGAISRQEASKDVHAVILSNKTLYLLDVLQKLPIDKMNSLNIHQEIIDEMSDIILMLYREYAGMFFKSQKLI
NQLKRLEQ

Sequences:

>Translated_248_residues
MRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIYNQWRGMGTLNSVDVISQHYKLQ
MDLYVSSYASLAAETIERSMDEGDIAPYNYQLLQFVLEKIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQAD
LIGYSFKFDGAISRQEASKDVHAVILSNKTLYLLDVLQKLPIDKMNSLNIHQEIIDEMSDIILMLYREYAGMFFKSQKLI
NQLKRLEQ
>Mature_248_residues
MRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIYNQWRGMGTLNSVDVISQHYKLQ
MDLYVSSYASLAAETIERSMDEGDIAPYNYQLLQFVLEKIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQAD
LIGYSFKFDGAISRQEASKDVHAVILSNKTLYLLDVLQKLPIDKMNSLNIHQEIIDEMSDIILMLYREYAGMFFKSQKLI
NQLKRLEQ

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_STAA1 (A7X2W3)

Other databases:

- EMBL:   AP009324
- RefSeq:   YP_001442143.1
- STRING:   A7X2W3
- EnsemblBacteria:   EBSTAT00000003447
- GeneID:   5559392
- GenomeReviews:   AP009324_GR
- KEGG:   saw:SAHV_1553
- eggNOG:   COG1381
- GeneTree:   EBGT00050000024483
- HOGENOM:   HBG535315
- OMA:   VMARGAK
- ProtClustDB:   CLSK885433
- BioCyc:   SAUR418127:SAHV_1553-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 28222; Mature: 28222

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIYNQ
CCCCCEEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRGMGTLNSVDVISQHYKLQMDLYVSSYASLAAETIERSMDEGDIAPYNYQLLQFVLEKI
HCCCCCCHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
ESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEASKD
CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHEEEEEEECCCCCHHHHCCC
VHAVILSNKTLYLLDVLQKLPIDKMNSLNIHQEIIDEMSDIILMLYREYAGMFFKSQKLI
CEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NQLKRLEQ
HHHHHHCC
>Mature Secondary Structure
MRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIYNQ
CCCCCEEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRGMGTLNSVDVISQHYKLQMDLYVSSYASLAAETIERSMDEGDIAPYNYQLLQFVLEKI
HCCCCCCHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
ESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEASKD
CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHEEEEEEECCCCCHHHHCCC
VHAVILSNKTLYLLDVLQKLPIDKMNSLNIHQEIIDEMSDIILMLYREYAGMFFKSQKLI
CEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NQLKRLEQ
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA