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The map label for this gene is rbgA [H]

Identifier: 148267734

GI number: 148267734

Start: 1354093

End: 1354977

Strand: Direct

Name: rbgA [H]

Synonym: SaurJH9_1302

Alternate gene names: 148267734

Gene position: 1354093-1354977 (Clockwise)

Preceding gene: 148267732

Following gene: 148267735

Centisome position: 46.59

GC content: 33.11

Gene sequence:

>885_bases
ATGGTTATTCAATGGTATCCAGGACATATGGCGAAAGCCAAAAGAGAAGTAAGTGAACAATTAAAAAAAGTAGATGTAGT
GTTTGAACTAGTAGATGCAAGAATTCCATATAGTTCAAGAAACCCTATGATAGATGAAGTTATTAACCAAAAACCACGTG
TTGTTATATTAAATAAAAAAGATATGTCTAATTTAAATGAGATGTCAAAATGGGAACAATTTTTTATTGATAAAGGATAC
TATCCTGTATCAGTGGATGCTAAGCACGGTAAAAATTTAAAGAAAGTGGAAGCTGCAGCAATTAAGGCGACTGCTGAAAA
ATTTGAACGCGAAAAAGCGAAAGGACTTAAACCTAGAGCGATAAGAGCAATGATCGTTGGAATTCCAAATGTTGGTAAAT
CCACATTAATAAATAAACTGGCAAAGCGTAGTATTGCGCAGACTGGTAATAAACCAGGTGTGACCAAACAACAACAATGG
ATTAAAGTTAGTAATGCATTACAACTATTAGACACACCAGGGATACTTTGGCCTAAATTTGAAGATGAAGAAGTCGGTAA
GAAGTTGAGTTTAACTGGTGCGATAAAAGATAGTATTGTGCACTTAGATGAAGTTGCCATCTATGGATTAAACTTTTTAA
TTCAAAATGATTTAGCGCGATTAAAGTCACATTATAATATTGAAGTTCCTGAAGATGCAGAAATCATAGCGTGGTTTGAT
GCGATAGGGAAAAAACGTGGCTTAATTCGACGTGGTAATGAAATTGATTACGAAGCAGTCATTGAACTGATTATTTATGA
TATTCGAAATGCTAAAATAGGAAATTATTGTTTTGATATTTTTAAAGATATGACTGAGGAATTAGCAAATGACGCTAACA
ATTAA

Upstream 100 bases:

>100_bases
TGTTAAAATAAATATAGTTGAATTAATGAATTTGTTCTATAATTAACAGGTTATAGATTTTAATAATGAGAAAAGAATTG
ACGAAAGTAAGGTGAATTGA

Downstream 100 bases:

>100_bases
AGAAGTTACGCAGTTGATTAATGCGGTTAATACAATAGAAGAATTAGAAAATCATGAATGCTTTTTAGATGAGCGAAAAG
GTGTTCAAAATGCCATAGCT

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MVIQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGY
YPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQW
IKVSNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKSHYNIEVPEDAEIIAWFD
AIGKKRGLIRRGNEIDYEAVIELIIYDIRNAKIGNYCFDIFKDMTEELANDANN

Sequences:

>Translated_294_residues
MVIQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGY
YPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQW
IKVSNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKSHYNIEVPEDAEIIAWFD
AIGKKRGLIRRGNEIDYEAVIELIIYDIRNAKIGNYCFDIFKDMTEELANDANN
>Mature_294_residues
MVIQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGY
YPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQW
IKVSNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKSHYNIEVPEDAEIIAWFD
AIGKKRGLIRRGNEIDYEAVIELIIYDIRNAKIGNYCFDIFKDMTEELANDANN

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=235, Percent_Identity=34.0425531914894, Blast_Score=136, Evalue=3e-32,
Organism=Homo sapiens, GI45643129, Length=289, Percent_Identity=26.643598615917, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI45643127, Length=289, Percent_Identity=26.643598615917, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI45593130, Length=289, Percent_Identity=26.643598615917, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI296317324, Length=277, Percent_Identity=25.2707581227437, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI9506611, Length=277, Percent_Identity=25.2707581227437, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI193211047, Length=231, Percent_Identity=30.3030303030303, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17534827, Length=285, Percent_Identity=27.0175438596491, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI25143545, Length=289, Percent_Identity=25.9515570934256, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI115535155, Length=288, Percent_Identity=25, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71982363, Length=187, Percent_Identity=28.8770053475936, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71990926, Length=153, Percent_Identity=27.4509803921569, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI32563985, Length=153, Percent_Identity=27.4509803921569, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI32563983, Length=153, Percent_Identity=27.4509803921569, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6323744, Length=229, Percent_Identity=28.82096069869, Blast_Score=82, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6320842, Length=169, Percent_Identity=31.9526627218935, Blast_Score=77, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6324381, Length=253, Percent_Identity=24.901185770751, Blast_Score=73, Evalue=6e-14,
Organism=Drosophila melanogaster, GI85815858, Length=230, Percent_Identity=33.0434782608696, Blast_Score=116, Evalue=2e-26,
Organism=Drosophila melanogaster, GI28572990, Length=184, Percent_Identity=28.804347826087, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI19922460, Length=265, Percent_Identity=24.5283018867925, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 33411; Mature: 33411

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKK
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEECCC
DMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA
CHHHHHHHHHHHHHHHCCCCEEEEECHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
IRAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKVSNALQLLDTPGILWPKF
HHEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
EDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKSHYNIEVPEDAEIIAWFD
CHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
AIGKKRGLIRRGNEIDYEAVIELIIYDIRNAKIGNYCFDIFKDMTEELANDANN
HHHHHCCHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVIQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKK
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEECCC
DMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA
CHHHHHHHHHHHHHHHCCCCEEEEECHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
IRAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKVSNALQLLDTPGILWPKF
HHEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
EDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKSHYNIEVPEDAEIIAWFD
CHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
AIGKKRGLIRRGNEIDYEAVIELIIYDIRNAKIGNYCFDIFKDMTEELANDANN
HHHHHCCHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]