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The map label for this gene is ylmE [H]

Identifier: 148267680

GI number: 148267680

Start: 1292607

End: 1293275

Strand: Direct

Name: ylmE [H]

Synonym: SaurJH9_1247

Alternate gene names: 148267680

Gene position: 1292607-1293275 (Clockwise)

Preceding gene: 148267679

Following gene: 148267681

Centisome position: 44.47

GC content: 32.88

Gene sequence:

>669_bases
GTGAAAGATAATTTACAACAAATCTCAACACAAATTAATGACAAAAGTGAAAAAAATAATTTTTCAACAAAACCAAACGT
GATTGCAGTTACAAAATATGTTACAATAGAGCGAGCTAAAGAAGCGTATGAGGCTGGAATAAGACATTTTGGTGAGAATA
GATTGGAAGGCTTTTTTCAAAAGAAAGAAGCATTACCATCAGATGCGGTGATTCATTTTATAGGATCATTACAATCTCGA
AAAGTTAAGGACGTTATAAACGACGTAGATTATTTCCATGCTTTAGATCGATTGAGCTTAGCCAAAGAAATTAACAAACG
TGCAGAACATAAAATTAAATGTTTCTTGCAAGTGAACGTTTCGGGAGAAGCTTCTAAACATGGTATTGCTTTAGAAGATG
TTGATCAGTTTATAGATGATCTTAAAAAATATGACAAAATCGAAATTGTAGGTTTAATGACGATGGCACCATTGACAGAT
GATGAAGCATATATTAGATCGTTATTTAAACAGTTACGTTTGAAAAAAGAAGAAATACAACGACTCAATTTAGAATATGC
GCCTTGTGATGAATTATCAATGGGAATGAGTAATGACTATCTTATTGCAGTTGAAGAAGGTGCGACGTTTGTTAGAATTG
GGACTAAACTTGTAGGAGAAGAGGAGTGA

Upstream 100 bases:

>100_bases
ATTTAGAATTATTTTTCTCTTATCGATTAGAAAAAGGTCAAACAGGACGCATGTTAGCATTCATTGGTCAACAGTAAACA
AGGAGGAGATATGTTTGCGT

Downstream 100 bases:

>100_bases
GCCACTTGGCTTTAAAAGATTTATTTAGTGGATTTTTTGTAATAGATGATGAAGAGGAAGTAGAAGTACCTGACAAACAA
CAACAGGTCAATGAAGCGCC

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MKDNLQQISTQINDKSEKNNFSTKPNVIAVTKYVTIERAKEAYEAGIRHFGENRLEGFFQKKEALPSDAVIHFIGSLQSR
KVKDVINDVDYFHALDRLSLAKEINKRAEHKIKCFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTD
DEAYIRSLFKQLRLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGEEE

Sequences:

>Translated_222_residues
MKDNLQQISTQINDKSEKNNFSTKPNVIAVTKYVTIERAKEAYEAGIRHFGENRLEGFFQKKEALPSDAVIHFIGSLQSR
KVKDVINDVDYFHALDRLSLAKEINKRAEHKIKCFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTD
DEAYIRSLFKQLRLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGEEE
>Mature_222_residues
MKDNLQQISTQINDKSEKNNFSTKPNVIAVTKYVTIERAKEAYEAGIRHFGENRLEGFFQKKEALPSDAVIHFIGSLQSR
KVKDVINDVDYFHALDRLSLAKEINKRAEHKIKCFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTD
DEAYIRSLFKQLRLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGEEE

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=218, Percent_Identity=33.4862385321101, Blast_Score=102, Evalue=3e-22,
Organism=Escherichia coli, GI1789321, Length=224, Percent_Identity=33.0357142857143, Blast_Score=103, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17533025, Length=238, Percent_Identity=28.9915966386555, Blast_Score=87, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6319435, Length=193, Percent_Identity=33.160621761658, Blast_Score=90, Evalue=3e-19,
Organism=Drosophila melanogaster, GI45550861, Length=240, Percent_Identity=29.1666666666667, Blast_Score=80, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25347; Mature: 25347

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDNLQQISTQINDKSEKNNFSTKPNVIAVTKYVTIERAKEAYEAGIRHFGENRLEGFFQ
CCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
KKEALPSDAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAKEINKRAEHKIKCFLQVNV
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEC
SGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQLRLKKEEIQ
CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCHHHHH
RLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGEEE
HHCCCCCCCCHHHCCCCCCEEEEEECCCEEEEECHHHCCCCC
>Mature Secondary Structure
MKDNLQQISTQINDKSEKNNFSTKPNVIAVTKYVTIERAKEAYEAGIRHFGENRLEGFFQ
CCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
KKEALPSDAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAKEINKRAEHKIKCFLQVNV
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEC
SGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQLRLKKEEIQ
CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCHHHHH
RLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGEEE
HHCCCCCCCCHHHCCCCCCEEEEEECCCEEEEECHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]