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The map label for this gene is sufD [H]

Identifier: 148267278

GI number: 148267278

Start: 915830

End: 917137

Strand: Direct

Name: sufD [H]

Synonym: SaurJH9_0844

Alternate gene names: 148267278

Gene position: 915830-917137 (Clockwise)

Preceding gene: 148267277

Following gene: 148267279

Centisome position: 31.51

GC content: 34.1

Gene sequence:

>1308_bases
ATGACAACTGATATTTTGAACATTTCTGAAGAACAACTTGTTGATTATTCTAAAGCCCACAATGAACCTTCTTGGATGAC
AGAATTACGTAAAAAAGCTTTGAAATTAACAGAAACTTTAGAAATGCCAAAACCTGATAAAACAAAATTAAGAAAATGGG
ATTTTGATTCTTTTAAACAACACGATGTAAAAGGTGATGTTTATCAATCTTTATCACAATTACCTGAGTCAGTAAGAGAA
ATTATTGACGTAGATCATTCTAAAAACTTAGTAATTCAACATAATAATACGATTGCGTACACACAAGTTGATGATAATGC
ATCGAAAGATGGCGTTATCGTTGAAGGTTTAGCAGACGCTCTTATGAACCATAGTGATTTAGTACAAAAGCACTTTATGA
AAGATGCAGTAACAGTAGATGAACATCGTATCACAGCGCTACACACGGCATTAGTTAATGGTGGCGTATTTGTTTATGTT
CCTAAAAATGTAGTTGTAGAACATCCAGTACAATACGTTGTGTTGCACGACGACAAAAATGCAAGCTTTTATAACCATGT
TATCATCGTTACTGAAGAAAGCGCCGAAGTCACATATGTTGAAAATTACTTATCAAATGCATCTGGTGAAGGAAATCAAT
TAAATATTATTTCTGAAGTGATTGCTGGTGCAAATTCAAATATCACATATGGCTCAGTGGACTATATGGATAAAGGCTTT
ACAGGTCATATCATTCGACGTGGTATTACTGAAGCGGATGCCTCAATTAATTGGGCACTAGGTTTAATGAATGAGGGTAG
CCAAATTATTGATAATACAACAAATTTATTTGGTGATCGTTCAACAAGTTCACTTAAATCAGTAGTTGTAGGTACAGGAG
AACAAAAAATTAATCTAACATCTAAAATCGTACAATATGGTAAAGAAACAGATGGTTATATCCTTAAACATGGTGTTATG
AAAGAACATGCATCATCTGTATTTAATGGTATCGGCTACATTAAGCATGGTGGAACTAAATCAATTGCTAATCAGGAATC
ACGTGTATTAATGTTATCTGAACATGCTCGTGGTGACGCGAATCCTATTTTATTAATTGATGAAGATGATGTACAAGCTG
GTCATGCTGCATCAGTAGGTCGTGTTGATCCAGATCAACTTTACTATTTAATGAGTCGTGGTATTTCTCAAAGAGAAGCG
GAACGTCTTGTTATACATGGTTTCTTAGATCCAGTAGTACGTGAATTACCTATCGAAGACGTTAAACGTCAATTGAGAGA
AGTAATTGAACGCAAAGTTTCTAAATAA

Upstream 100 bases:

>100_bases
TAATCTTATTAATACAGTATCCATGAGATGTTCATCTATATATGATGAAAATGAACATTTATACGAAATAGTAAATTTCA
TCAAGTAGGAGGAAAAAGTT

Downstream 100 bases:

>100_bases
TATTTTGAAAATAAAAGTTTGTAATAGATATAGACTGTCGATATTGGTATAAGACTAATACAACGTCAGTATTTAAATGA
TTAGGATTTTTATTTAAGAA

Product: FeS assembly protein SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVRE
IIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKHFMKDAVTVDEHRITALHTALVNGGVFVYV
PKNVVVEHPVQYVVLHDDKNASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGF
TGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVM
KEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREA
ERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK

Sequences:

>Translated_435_residues
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVRE
IIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKHFMKDAVTVDEHRITALHTALVNGGVFVYV
PKNVVVEHPVQYVVLHDDKNASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGF
TGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVM
KEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREA
ERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK
>Mature_434_residues
TTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREI
IDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKHFMKDAVTVDEHRITALHTALVNGGVFVYVP
KNVVVEHPVQYVVLHDDKNASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFT
GHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMK
EHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAE
RLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=452, Percent_Identity=23.6725663716814, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1787971, Length=278, Percent_Identity=23.021582733813, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 48522; Mature: 48391

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQ
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHH
HDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADA
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEEECCCCCCCCEEHHHHHHH
LMNHSDLVQKHFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDKN
HCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCEEEECCEEEEEEECCCC
ASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGF
CCEEEEEEEEEECCCCCHHHHHHHHCCCCCCCEEHHHHHHHCCCCCCCEECCHHHCCCCC
TGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLT
CHHHHHCCCCCCCCCEEEEEEECCCCCHHHHCHHHHCCCCCHHHHHHHEEECCCCHHHHH
SKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDA
HHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEECCCCCCC
NPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIED
CEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHH
VKRQLREVIERKVSK
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQ
CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHH
HDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADA
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEEECCCCCCCCEEHHHHHHH
LMNHSDLVQKHFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDKN
HCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCEEEECCEEEEEEECCCC
ASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGF
CCEEEEEEEEEECCCCCHHHHHHHHCCCCCCCEEHHHHHHHCCCCCCCEECCHHHCCCCC
TGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLT
CHHHHHCCCCCCCCCEEEEEEECCCCCHHHHCHHHHCCCCCHHHHHHHEEECCCCHHHHH
SKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDA
HHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEECCCCCCC
NPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIED
CEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHH
VKRQLREVIERKVSK
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]