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The map label for this gene is opuBB [H]

Identifier: 148267182

GI number: 148267182

Start: 815369

End: 816883

Strand: Direct

Name: opuBB [H]

Synonym: SaurJH9_0746

Alternate gene names: 148267182

Gene position: 815369-816883 (Clockwise)

Preceding gene: 148267181

Following gene: 148267183

Centisome position: 28.05

GC content: 31.55

Gene sequence:

>1515_bases
ATGACTAACTTTTTCGACATATTGAGTGAACGTAAGGGGCAACTCTTTTCGACAATGATAGAACATATTCAAATATCATT
TATTGCATTATTGATTGCAACTGCTATTGCGGTACCATTAGGTATTTTATTAACGAAGACTAAAACGATATCTGAAATCG
TAATGAATATTGCGGCAATTCTTCAAACCATACCATCGTTGGCATTATTAGGTTTAATGATTCCTTTATTTGGTATCGGT
CGTGTGCCAGCAATTATTGCACTTGTAGTGTATGCGTTGTTACCAATTTTAAGGAATACGTATACTGGAATTAAAGAAGT
TGATCCATCACTCATTGAAGCGGCTAAAGGTATAGGTATGAAACCATTTAGACGTTTAACTAAAGTCGAACTTCCGATAG
CAATGCCTGTTATAATGGCTGGTGTAAGAACGGCTATGGTATTAATTATAGGTACAGCGACACTAGCAGCATTAATTGGT
GCAGGCGGACTAGGAGATTTAATTTTATTAGGTATAGACCGTAACAATGCGTCATTGATATTATTAGGTGCAATTCCAGC
AGCCTTATTGGCAATTATATTTGATTTAATTTTAAGATTTATGGCTAAATTATCTTATAAAAAGTTATTGATGACGTTAG
GTGTTATAGTGATGATTATTATACTGGCCATCGCTATTCCTATGTTTGCACAAAAAGGTGATAAAATTACGTTAGCTGGA
AAGCTTGGCTCCGAGCCTTCGATTATTACAAATATGTATAAAATTTTAATAGAAGAAGAGACCAAAAATACTGTAGAAGT
GAAAGATGGTATGGGGAAAACAGCATTTTTATTTAATGCTTTAAAATCTGATGATATAGATGGGTATTTAGAGTTTACTG
GAACAGTTTTAGGTGAATTAACAAAAGAACCATTGAAGTCAAAAGAAGAGAAAAAAGTTTATGAACAAGCTAAGCAAAGT
CTTGAAAAGAAATATCAAATGACTATGTTAAAACCAATGAAGTATAACAATACGTATGCTTTAGCTGTAAAACGTGATTT
TGCTAAACAACATAATATACGTACAATTGGTGATTTAAATAAGGTTAAAGATCAACTTAAACCAGGATTTACATTGGAAT
TTAATGATCGTCCAGATGGTTACAAAGCTGTTCAAAAGGCTTATAATTTAAATTTAGATAACATACGTACAATGGAACCT
AAGTTGAGATATCAAGCGATCAATAAAGGTAATATTAATTTAATAGATGCATATTCAACTGACGCTGAATTAAAACAATA
TGATATGGTTGTGTTAAAAGATGATAAGCACGTATTTCCACCATATCAAGGAGCACCATTATTTAAAGAAAGCTTTTTAA
AGAAACATCCAGAAATTAAGAAACCGTTAAACAAACTAGAAAACAAAATATCTGATGAAGATATGCAAATGATGAACTAT
AAAGTAACAGTTAAAAATGAAGACCCATATACAGTTGCGAAAGATTATTTAAAAGCAAAAGGGTTAATCAAATAA

Upstream 100 bases:

>100_bases
GAGCGTGTCATTGTCATGCAAGAAGATAGCGTAGGTCAATATGTTATTGATAGGAAAGATATCTTCAAATATTTGTCCCA
GAAAAAGGAGGTAGCTCAAC

Downstream 100 bases:

>100_bases
CGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCA
ATTTAAACATGCAATAATGA

Product: substrate-binding region of ABC-type glycine betaine transport system

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 504; Mature: 503

Protein sequence:

>504_residues
MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIG
RVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGMKPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIG
AGGLGDLILLGIDRNNASLILLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAG
KLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQS
LEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEP
KLRYQAINKGNINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNY
KVTVKNEDPYTVAKDYLKAKGLIK

Sequences:

>Translated_504_residues
MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIG
RVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGMKPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIG
AGGLGDLILLGIDRNNASLILLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAG
KLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQS
LEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEP
KLRYQAINKGNINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNY
KVTVKNEDPYTVAKDYLKAKGLIK
>Mature_503_residues
TNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIGR
VPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGMKPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGA
GGLGDLILLGIDRNNASLILLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGK
LGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQSL
EKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPK
LRYQAINKGNINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYK
VTVKNEDPYTVAKDYLKAKGLIK

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=189, Percent_Identity=42.3280423280423, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1788451, Length=201, Percent_Identity=37.3134328358209, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1789033, Length=173, Percent_Identity=37.5722543352601, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788452, Length=306, Percent_Identity=25.8169934640523, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI87081802, Length=149, Percent_Identity=32.2147651006711, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 56059; Mature: 55928

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAI
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGM
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHCCCC
KPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLI
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEE
LLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAG
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
KLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGEL
CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
TKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLN
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCEECCCEEEEEEEHHHHHHCCCCHHHHHH
KVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYST
HHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHEECCCCCEEEECCCC
DAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNY
CCHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHEE
KVTVKNEDPYTVAKDYLKAKGLIK
EEEEECCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAI
CHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGM
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHCCCC
KPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLI
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEE
LLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAG
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
KLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGEL
CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
TKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLN
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCEECCCEEEEEEEHHHHHHCCCCHHHHHH
KVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYST
HHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHEECCCCCEEEECCCC
DAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNY
CCHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHEE
KVTVKNEDPYTVAKDYLKAKGLIK
EEEEECCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377 [H]