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The map label for this gene is yvrC [H]

Identifier: 148267069

GI number: 148267069

Start: 700525

End: 701412

Strand: Direct

Name: yvrC [H]

Synonym: SaurJH9_0632

Alternate gene names: 148267069

Gene position: 700525-701412 (Clockwise)

Preceding gene: 148267068

Following gene: 148267070

Centisome position: 24.1

GC content: 32.09

Gene sequence:

>888_bases
GTGAAGAAATCGTTAATTGCTTTTATTTTGATTTTTATGCTTGTCCTGAGTGGCTGTGGTATGAAAGATAATGATAAACA
AGGTAGCGATGATAATGGCTCGTCTAAATCGCCGTACCATAGAATTGTTTCGTTAATGCCTAGTAATACTGAAATTTTAT
ATGAATTAGGATTAGGTAAATACATAGTTGGTGTTTCAACGGTTGATGATTATCCAAAAGATGTGAAAGAGGGTAAGAAA
CAATTTGATGCTTTGAATCTAAATAAAGAGGAACTTTTAAAGGCAAAGCCAGATCTAATTCTTGCGCATGAGTCGCAAAA
GGCAACTGCTAATAAAGTATTGTCATCATTAGAGAAACAAGGCATCAAAGTAGTGTATGTTAAAGATGCACAATCAATTG
ATGAAACATACAACACATTTAAGCAAATTGGGAAATTAACGCATCATGATAAGCAGGCTGAACAACTTGTTGAGGAAACT
AAAGATAATATCGATAAAGTCATAGATTCAATTCCTGCTCATCATAAAAAATCAAAAGTATTTATTGAGGTTTCATCAAA
GCCTGAAATATATACAGCAGGGAAGCATACATTTTTTAATGATATGTTAGAAAAATTAGAAGCCCAAAATGTTTATAGTG
ACATTAATGGTTGGAACCCTGTAACGAAGGAAAGTATTATTAAAAAGAACCCAGATATATTAATTTCGACGGAAGCTAAG
ACAAGATCAGATTATATGGATATCATCAAAAAAAGGGGTGGATTCAATAAAATTAATGCTGTCAAGAATACACGTATTGA
AGTTGTAAATGGTGATGAAGTATCAAGACCAGGTCCACGTATTGATGAAGGATTAAAAGAATTAAGAGATGCAATTTATA
GAAAATAA

Upstream 100 bases:

>100_bases
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGAT
TAAAAAGGAGATGTGATAAT

Downstream 100 bases:

>100_bases
ACCATTCTAATTATGCCCCTTATTGCTACATGTAAAAAAATACATGTTTGAGATAAGGGGTTTTTAAAATATATTTAGTG
AATGATAGCAACGCGAGTAT

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MKKSLIAFILIFMLVLSGCGMKDNDKQGSDDNGSSKSPYHRIVSLMPSNTEILYELGLGKYIVGVSTVDDYPKDVKEGKK
QFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQGIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEET
KDNIDKVIDSIPAHHKKSKVFIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAK
TRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK

Sequences:

>Translated_295_residues
MKKSLIAFILIFMLVLSGCGMKDNDKQGSDDNGSSKSPYHRIVSLMPSNTEILYELGLGKYIVGVSTVDDYPKDVKEGKK
QFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQGIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEET
KDNIDKVIDSIPAHHKKSKVFIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAK
TRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
>Mature_295_residues
MKKSLIAFILIFMLVLSGCGMKDNDKQGSDDNGSSKSPYHRIVSLMPSNTEILYELGLGKYIVGVSTVDDYPKDVKEGKK
QFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQGIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEET
KDNIDKVIDSIPAHHKKSKVFIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAK
TRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786353, Length=255, Percent_Identity=27.0588235294118, Blast_Score=98, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 33257; Mature: 33257

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSLIAFILIFMLVLSGCGMKDNDKQGSDDNGSSKSPYHRIVSLMPSNTEILYELGLGK
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCC
YIVGVSTVDDYPKDVKEGKKQFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQ
EEEECCCHHCCHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC
GIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEETKDNIDKVIDSIPAHHKKSKV
CCEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
FIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAK
EEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEEEECCCH
TRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
HHHHHHHHHHHCCCCCHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKSLIAFILIFMLVLSGCGMKDNDKQGSDDNGSSKSPYHRIVSLMPSNTEILYELGLGK
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCC
YIVGVSTVDDYPKDVKEGKKQFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQ
EEEECCCHHCCHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC
GIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEETKDNIDKVIDSIPAHHKKSKV
CCEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
FIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAK
EEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEEEECCCH
TRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
HHHHHHHHHHHCCCCCHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]