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The map label for this gene is xylR [H]

Identifier: 148266479

GI number: 148266479

Start: 43485

End: 44594

Strand: Direct

Name: xylR [H]

Synonym: SaurJH9_0032

Alternate gene names: 148266479

Gene position: 43485-44594 (Clockwise)

Preceding gene: 148266478

Following gene: 148266481

Centisome position: 1.5

GC content: 29.28

Gene sequence:

>1110_bases
GTGCTAAGGGAAATTTATAACCATCATAATATTTCGCGTACTCAAATATCTAAAAATCTTGAGATTAATAAGGCAACGAT
TTCTAGTATTTTGAATAAGTTAAAGTATAAATCTCTTGTTAATGAGGTTGGTGAGGGTGATAGCACGAAGAGTGGTGGTA
GAAAACCTATTCTTCTGAAGGTTAATCATCTTTATGGTTATTTTATTTCTTTGGATTTAACTTATAGTTCTGTTGAAGTG
ATGTACAATTATTTTGATGGTAATGTCATTAAGCATGAATCTTATGATTTACCTGATGAAAAGGTTAGTAGTATATTAAG
CATAATAAAAAAACATATTGATATTCAGGAGAAACTTGATACTTATAACGGACTATTAGGTGTGTCTGTTTCTATACATG
GAGTTGTGGATAATGAGCAGCATGTGACATATTTACCATTCCATGAAACTGAAGGAATTTCAATTGCTAAGAAAATAAAA
GAAATTACTAATGTTCCAGTCGTAGTTGAAAATGAAGCGAATCTTTCAGCGTTATATGAACGTAATTTTAATCATAATTT
ATCCTACAATAATCTTATTGCTTTAAGTATACATAAAGGTATTGGTGCTGGGCTTATTATTAATAATCAATTGTATCGTG
GTGCAAATGGGGAAGCGGGTGAAATTGGAAAAACACTTGTCTCAAAAGTTAGCGATAATGTGGAGATCTTTCATAAGATT
GAAGATATTTTTTCACAAGAAGCTTTACTGCATAATTTAAGTAATCAACTAAATGAGAAGATGACGCTTAGCAAATTAAT
TCAATTTTATAATGAAAAAAATCCAGTCGTAGTTGAAGAAATGGAACAATTTATAAATAAAATTGCTGTTTTAATACATA
ATTTAAACACCCAGTTTAATCCGAATGCAATTTACATTAACTGTCCATTGTTCAATGAAATGCCTGAAATATTAGAAGCA
ATTAAGAACCAGTTCAAACAATATTCACGTAACGAAATTCAAATAAAGTTAACATCTAATGTCAAATTTGCAACTTTGCT
AGGTGGTACATTAGCAATTATCCAAAAAGTACTACAGATTAATGATATTTACTTAGATATAAAAGCATAA

Upstream 100 bases:

>100_bases
AGTTGGTATAAAAATACATGATAAACTATAAACTAAATTCAAAATAACTTATGGGGTAGGCAATTATGGAAAATAAAATA
TAAATGATAATGAAAAAAGA

Downstream 100 bases:

>100_bases
AAAACTAATTCAAATGAATAATCAAAGTTCGTAATTGTCTTTATAAAAAAATCCCTCAATCCGAATTGAATTTTCGGATT
GAGGGATTTTTATAGTTCTA

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MLREIYNHHNISRTQISKNLEINKATISSILNKLKYKSLVNEVGEGDSTKSGGRKPILLKVNHLYGYFISLDLTYSSVEV
MYNYFDGNVIKHESYDLPDEKVSSILSIIKKHIDIQEKLDTYNGLLGVSVSIHGVVDNEQHVTYLPFHETEGISIAKKIK
EITNVPVVVENEANLSALYERNFNHNLSYNNLIALSIHKGIGAGLIINNQLYRGANGEAGEIGKTLVSKVSDNVEIFHKI
EDIFSQEALLHNLSNQLNEKMTLSKLIQFYNEKNPVVVEEMEQFINKIAVLIHNLNTQFNPNAIYINCPLFNEMPEILEA
IKNQFKQYSRNEIQIKLTSNVKFATLLGGTLAIIQKVLQINDIYLDIKA

Sequences:

>Translated_369_residues
MLREIYNHHNISRTQISKNLEINKATISSILNKLKYKSLVNEVGEGDSTKSGGRKPILLKVNHLYGYFISLDLTYSSVEV
MYNYFDGNVIKHESYDLPDEKVSSILSIIKKHIDIQEKLDTYNGLLGVSVSIHGVVDNEQHVTYLPFHETEGISIAKKIK
EITNVPVVVENEANLSALYERNFNHNLSYNNLIALSIHKGIGAGLIINNQLYRGANGEAGEIGKTLVSKVSDNVEIFHKI
EDIFSQEALLHNLSNQLNEKMTLSKLIQFYNEKNPVVVEEMEQFINKIAVLIHNLNTQFNPNAIYINCPLFNEMPEILEA
IKNQFKQYSRNEIQIKLTSNVKFATLLGGTLAIIQKVLQINDIYLDIKA
>Mature_369_residues
MLREIYNHHNISRTQISKNLEINKATISSILNKLKYKSLVNEVGEGDSTKSGGRKPILLKVNHLYGYFISLDLTYSSVEV
MYNYFDGNVIKHESYDLPDEKVSSILSIIKKHIDIQEKLDTYNGLLGVSVSIHGVVDNEQHVTYLPFHETEGISIAKKIK
EITNVPVVVENEANLSALYERNFNHNLSYNNLIALSIHKGIGAGLIINNQLYRGANGEAGEIGKTLVSKVSDNVEIFHKI
EDIFSQEALLHNLSNQLNEKMTLSKLIQFYNEKNPVVVEEMEQFINKIAVLIHNLNTQFNPNAIYINCPLFNEMPEILEA
IKNQFKQYSRNEIQIKLTSNVKFATLLGGTLAIIQKVLQINDIYLDIKA

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=324, Percent_Identity=25.6172839506173, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI87082127, Length=390, Percent_Identity=23.0769230769231, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1787878, Length=366, Percent_Identity=22.1311475409836, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR002831
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK; PF01978 TrmB [H]

EC number: NA

Molecular weight: Translated: 41817; Mature: 41817

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS01125 ROK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLREIYNHHNISRTQISKNLEINKATISSILNKLKYKSLVNEVGEGDSTKSGGRKPILLK
CCHHHHHCCCCCHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
VNHLYGYFISLDLTYSSVEVMYNYFDGNVIKHESYDLPDEKVSSILSIIKKHIDIQEKLD
EECEEEEEEEEEEEHHHHHHHEECCCCCEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHH
TYNGLLGVSVSIHGVVDNEQHVTYLPFHETEGISIAKKIKEITNVPVVVENEANLSALYE
HHCCEEEEEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHH
RNFNHNLSYNNLIALSIHKGIGAGLIINNQLYRGANGEAGEIGKTLVSKVSDNVEIFHKI
CCCCCCCCCCCEEEEEEECCCCCCEEECCCEECCCCCCCHHHHHHHHHHHCCCHHHHHHH
EDIFSQEALLHNLSNQLNEKMTLSKLIQFYNEKNPVVVEEMEQFINKIAVLIHNLNTQFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCCCCC
PNAIYINCPLFNEMPEILEAIKNQFKQYSRNEIQIKLTSNVKFATLLGGTLAIIQKVLQI
CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEHHHHHHHHHHHHHHHH
NDIYLDIKA
CEEEEEEEC
>Mature Secondary Structure
MLREIYNHHNISRTQISKNLEINKATISSILNKLKYKSLVNEVGEGDSTKSGGRKPILLK
CCHHHHHCCCCCHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
VNHLYGYFISLDLTYSSVEVMYNYFDGNVIKHESYDLPDEKVSSILSIIKKHIDIQEKLD
EECEEEEEEEEEEEHHHHHHHEECCCCCEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHH
TYNGLLGVSVSIHGVVDNEQHVTYLPFHETEGISIAKKIKEITNVPVVVENEANLSALYE
HHCCEEEEEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHH
RNFNHNLSYNNLIALSIHKGIGAGLIINNQLYRGANGEAGEIGKTLVSKVSDNVEIFHKI
CCCCCCCCCCCEEEEEEECCCCCCEEECCCEECCCCCCCHHHHHHHHHHHCCCHHHHHHH
EDIFSQEALLHNLSNQLNEKMTLSKLIQFYNEKNPVVVEEMEQFINKIAVLIHNLNTQFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCCCCC
PNAIYINCPLFNEMPEILEAIKNQFKQYSRNEIQIKLTSNVKFATLLGGTLAIIQKVLQI
CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEHHHHHHHHHHHHHHHH
NDIYLDIKA
CEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1714034 [H]