Definition | Acidiphilium cryptum JF-5 plasmid pACRY01, complete sequence. |
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Accession | NC_009467 |
Length | 203,589 |
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The map label for this gene is traC [H]
Identifier: 148243780
GI number: 148243780
Start: 175195
End: 175518
Strand: Reverse
Name: traC [H]
Synonym: Acry_3263
Alternate gene names: 148243780
Gene position: 175518-175195 (Counterclockwise)
Preceding gene: 148243784
Following gene: 148243779
Centisome position: 86.21
GC content: 66.36
Gene sequence:
>324_bases ATGATCGCGGACAAGCTGGGGATCGGCCATGATCCGGGCCAGCATGCGGCCTATGTCGGGAGCTGGATCAAAGCCTTGCA GCAAGACGCGCGAGAGATCTTCCGGGCGGCTGCCGATGCCGAGAAGATTTCCGGGTATCTGATGGCGCTGCGGGCCGAGC AGAAGGCCGGGCAAGCCGTTGGCCGGGGTGACAGCCAGGCAGGCGAACAGGCGCGTGGTTACTGGCAGCGGGCCGCTGAG AGTGGTGCTGAAATCCGGCGGGCGGAACGAACCGAACAGCCCGAGCAGGAGCGGCAGGCACGGCGTACAACGGCAGGGCG GTAA
Upstream 100 bases:
>100_bases CACAGGGCACCCCTCGCGGCTGAACCGGCCGGATCTTGGCACCCCGTTTGGATCGGAAGCCTACGCGCGGGAGGAGCTAA GGGCGGAGATCGCCTCGCTG
Downstream 100 bases:
>100_bases ATGATGAGGATCTGCCAACTAAGGTATCTGGACTGCGCGGTGTAGACGAGAAGACGCTCTACAACCGTTTCATCCGCTGG AGCCGGGTTGGCGTGTTCAG
Product: antirestriction protein-like protein
Products: NA
Alternate protein names: Replication primase [H]
Number of amino acids: Translated: 107; Mature: 107
Protein sequence:
>107_residues MIADKLGIGHDPGQHAAYVGSWIKALQQDAREIFRAAADAEKISGYLMALRAEQKAGQAVGRGDSQAGEQARGYWQRAAE SGAEIRRAERTEQPEQERQARRTTAGR
Sequences:
>Translated_107_residues MIADKLGIGHDPGQHAAYVGSWIKALQQDAREIFRAAADAEKISGYLMALRAEQKAGQAVGRGDSQAGEQARGYWQRAAE SGAEIRRAERTEQPEQERQARRTTAGR >Mature_107_residues MIADKLGIGHDPGQHAAYVGSWIKALQQDAREIFRAAADAEKISGYLMALRAEQKAGQAVGRGDSQAGEQARGYWQRAAE SGAEIRRAERTEQPEQERQARRTTAGR
Specific function: Required for autonomous replication in E.coli. Transferred into the recipient cell during bacterial conjugation. Catalyzes the synthesis of short oligoribonucleotide primers with CpA or pCpA at their 5'-termini on a single stranded template DNA [H]
COG id: COG4227
COG function: function code L; Antirestriction protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013610 - InterPro: IPR006171 [H]
Pfam domain/function: PF08401 DUF1738; PF01751 Toprim [H]
EC number: NA
Molecular weight: Translated: 11736; Mature: 11736
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIADKLGIGHDPGQHAAYVGSWIKALQQDAREIFRAAADAEKISGYLMALRAEQKAGQAV CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GRGDSQAGEQARGYWQRAAESGAEIRRAERTEQPEQERQARRTTAGR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC >Mature Secondary Structure MIADKLGIGHDPGQHAAYVGSWIKALQQDAREIFRAAADAEKISGYLMALRAEQKAGQAV CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GRGDSQAGEQARGYWQRAAESGAEIRRAERTEQPEQERQARRTTAGR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1818755 [H]