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The map label for this gene is chrR [H]

Identifier: 147675664

GI number: 147675664

Start: 2008917

End: 2009597

Strand: Reverse

Name: chrR [H]

Synonym: VC0395_A1890

Alternate gene names: 147675664

Gene position: 2009597-2008917 (Counterclockwise)

Preceding gene: 147673682

Following gene: 147674547

Centisome position: 66.45

GC content: 48.75

Gene sequence:

>681_bases
ATGAGTTATCACCCTAATTATGCTTTACTCGCAGCCTATGCTGAGGGCGGTCTTGATTCTGCGCATGGTTTGGCGATTTC
TGCTCATTTGGAAATCTGCCCACATTGTCGTGACTTGGTGCATGAGATTGAGGCAGAACTTGGTGAGTTACTCAATCAGC
AAGCGGCCTCTTCTGTCGCCTTGTCAGACGATGCCAACTGGCAAGCGATGTTCGATTCGATTGTGGCCTTGCCGCAGCAA
GCGGCATCGAACACTCCCGTTAAAACCACACCGGTAATGGTGACGGTAAACGGTAAGCAGATTGCGATTCCCAAAGTCTT
AGCGCGTTTGGTTAAACCTGAGCAGCAGTGGCGCAGCTACGGTGGCAAAGTGTTCAGTTTACCTTTGCAGTCGGAAGATA
ATGTACGGATGAATCTGATGTACATCAGCCAAGGGGTTTCTATTCCTCAGCACACCCATAAAGGGTTTGAGTCGACCTTG
GTGTTGCACGGTGGTTTTAGTGATGAAAATGGTCATTACGATGTGGGTGATTTTATGCAGCATGATGGTCAAATCTGCCA
TTCGCCAAGCACACCGCAAGATCAAGACTGCCTTTGCTTAACCGTATTGACTGAGCCTATGGTCTTTACCCAAGGGGTAG
CGCGGATCTTTAACCTGTTTGGCAAGGGACTTTACCCGTAA

Upstream 100 bases:

>100_bases
AAGATGTGGCCGATATGCTCGACATTCCACTCGGCACTGTGAAATCACGTCTACGTCTTGCGGTAGAAAAGTTAAGATTA
TCAATGGATGCGGAGTCCTT

Downstream 100 bases:

>100_bases
CCGTTAATGAGCTTGAAAATAAACAAGGGAGCGATGAAGCTCCCTTGTTGGTTTAGTGAAGGGTTTATTTGGTGAATGGT
GTGCGCCTTACTGGATGATT

Product: putative transcriptional activator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MSYHPNYALLAAYAEGGLDSAHGLAISAHLEICPHCRDLVHEIEAELGELLNQQAASSVALSDDANWQAMFDSIVALPQQ
AASNTPVKTTPVMVTVNGKQIAIPKVLARLVKPEQQWRSYGGKVFSLPLQSEDNVRMNLMYISQGVSIPQHTHKGFESTL
VLHGGFSDENGHYDVGDFMQHDGQICHSPSTPQDQDCLCLTVLTEPMVFTQGVARIFNLFGKGLYP

Sequences:

>Translated_226_residues
MSYHPNYALLAAYAEGGLDSAHGLAISAHLEICPHCRDLVHEIEAELGELLNQQAASSVALSDDANWQAMFDSIVALPQQ
AASNTPVKTTPVMVTVNGKQIAIPKVLARLVKPEQQWRSYGGKVFSLPLQSEDNVRMNLMYISQGVSIPQHTHKGFESTL
VLHGGFSDENGHYDVGDFMQHDGQICHSPSTPQDQDCLCLTVLTEPMVFTQGVARIFNLFGKGLYP
>Mature_225_residues
SYHPNYALLAAYAEGGLDSAHGLAISAHLEICPHCRDLVHEIEAELGELLNQQAASSVALSDDANWQAMFDSIVALPQQA
ASNTPVKTTPVMVTVNGKQIAIPKVLARLVKPEQQWRSYGGKVFSLPLQSEDNVRMNLMYISQGVSIPQHTHKGFESTLV
LHGGFSDENGHYDVGDFMQHDGQICHSPSTPQDQDCLCLTVLTEPMVFTQGVARIFNLFGKGLYP

Specific function: Anti-sigma factor that inhibits the activity of the extracytoplasmic function (ECF) sigma (E) factor, thereby indirectly regulating the transcription of the cycA and rpoE genes [H]

COG id: COG3806

COG function: function code T; Anti-sigma factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012807
- InterPro:   IPR011051
- InterPro:   IPR014710 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24703; Mature: 24572

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYHPNYALLAAYAEGGLDSAHGLAISAHLEICPHCRDLVHEIEAELGELLNQQAASSVA
CCCCCCEEEEEEECCCCCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCEE
LSDDANWQAMFDSIVALPQQAASNTPVKTTPVMVTVNGKQIAIPKVLARLVKPEQQWRSY
ECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEHHHHHHHHCCCHHHHHHC
GGKVFSLPLQSEDNVRMNLMYISQGVSIPQHTHKGFESTLVLHGGFSDENGHYDVGDFMQ
CCEEEEEECCCCCCCEEEEEEEECCCCCCHHHHCCCCEEEEEECCCCCCCCCCCHHHHHH
HDGQICHSPSTPQDQDCLCLTVLTEPMVFTQGVARIFNLFGKGLYP
CCCCEECCCCCCCCCCCEEEEEHHCCHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SYHPNYALLAAYAEGGLDSAHGLAISAHLEICPHCRDLVHEIEAELGELLNQQAASSVA
CCCCCEEEEEEECCCCCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCEE
LSDDANWQAMFDSIVALPQQAASNTPVKTTPVMVTVNGKQIAIPKVLARLVKPEQQWRSY
ECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEHHHHHHHHCCCHHHHHHC
GGKVFSLPLQSEDNVRMNLMYISQGVSIPQHTHKGFESTLVLHGGFSDENGHYDVGDFMQ
CCEEEEEECCCCCCCEEEEEEEECCCCCCHHHHCCCCEEEEEECCCCCCCCCCCHHHHHH
HDGQICHSPSTPQDQDCLCLTVLTEPMVFTQGVARIFNLFGKGLYP
CCCCEECCCCCCCCCCCEEEEEHHCCHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721683 [H]