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The map label for this gene is yagA [H]

Identifier: 147674822

GI number: 147674822

Start: 363965

End: 364948

Strand: Direct

Name: yagA [H]

Synonym: VC0395_A0341

Alternate gene names: 147674822

Gene position: 363965-364948 (Clockwise)

Preceding gene: 147673477

Following gene: 147675654

Centisome position: 12.04

GC content: 45.02

Gene sequence:

>984_bases
GTGTCTATGGACAGAGAAATCCAACAAAGACTACAGTGGGTAAAAATGTATGAGGAATGTGGTGATGCAGGCCTCGTATG
TCGACGCTGTGGTATTTCCAGACCAACATTACGAAAGTGGGCTAAGCGATATAAGCAATGTGGAATCGCTGGTCTGGAAA
GCCAGAGCAGACGCCCTCATTCATCTCCAGATACCAAACTCACTGATGAGCTAAGAGCATTGATCCTTACGATGCGTGAC
AAACGCAATTTAGGGGCGCGACGTTTACAAACGGAATTAATCCGACTTCACAAAATACACCTAAGCACAGCGACACTCCA
TAAAGTTTTATCCGAAGCATCAGTCAAACCCATCGTAACTTACCGACGCAAAAAAGATTTCCAAAGATATGAGCGCCCAA
TTCCTGGTGATAGAGTCCAGATGGACACGTGTAAAATAGCGCCTGGAATTTACCAGTATACAGCTATTGATGATTGCTCT
CGCTATCGGGTTCTAAGGTGCTACTCTCGGCGCACAGCAGCAAATACAGTCGACTTTATCGATTGTGTCGTGGAAGAGAT
GCCATTTCCTATCCAGCGTATTCAGACGGACAGAGGGCGTGAATTCTTTGCTGAAAAAGTCCAGAAACAACTCATGATTT
ATGGGATCAAGTTTCGCCCAAATAAGCCTGGCTCACCTCACTTGAATGGCAAAGTGGAACGCTCGCAGAAAACAGATAAA
AGTGAGTTCTATCCGACCATAGATGTCTCTGTGGGGCTGCAAGAACTGGATCTGCTACTAGCTGAATGGCAACACTACTA
CAACTGGGAACGGCCCCACAGCTCGTTAAATGGGCTAACCCCGATAGACAGGATTACTGAGATATCTGATCAAACTCCTT
TGTCTGAAGAGGTATCTCAGAACTACCAGATCAAGAAAGAGCGGTTTCAAGAGCAAAATTACAAGCTCGATCTTCAGCTA
AGAAAATTGAAACCATCTCTATGA

Upstream 100 bases:

>100_bases
TTATTTTTTAAGTTTTTATCCATGCTTATAGGCCCTGATAAAGCAGTAGCGTGAATGACTTAAAGTGTGTGATTCATAGA
CATCCTTTCAACTATACTGG

Downstream 100 bases:

>100_bases
ATCACACACCTACTTAGATTGATAGTTAGCCAATAGGGCAAGTTTTAGGCATACCAAGCCCTGTTATCTTATTTAACGCT
TTGATCATCGGGTAAGCCTC

Product: putative transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MSMDREIQQRLQWVKMYEECGDAGLVCRRCGISRPTLRKWAKRYKQCGIAGLESQSRRPHSSPDTKLTDELRALILTMRD
KRNLGARRLQTELIRLHKIHLSTATLHKVLSEASVKPIVTYRRKKDFQRYERPIPGDRVQMDTCKIAPGIYQYTAIDDCS
RYRVLRCYSRRTAANTVDFIDCVVEEMPFPIQRIQTDRGREFFAEKVQKQLMIYGIKFRPNKPGSPHLNGKVERSQKTDK
SEFYPTIDVSVGLQELDLLLAEWQHYYNWERPHSSLNGLTPIDRITEISDQTPLSEEVSQNYQIKKERFQEQNYKLDLQL
RKLKPSL

Sequences:

>Translated_327_residues
MSMDREIQQRLQWVKMYEECGDAGLVCRRCGISRPTLRKWAKRYKQCGIAGLESQSRRPHSSPDTKLTDELRALILTMRD
KRNLGARRLQTELIRLHKIHLSTATLHKVLSEASVKPIVTYRRKKDFQRYERPIPGDRVQMDTCKIAPGIYQYTAIDDCS
RYRVLRCYSRRTAANTVDFIDCVVEEMPFPIQRIQTDRGREFFAEKVQKQLMIYGIKFRPNKPGSPHLNGKVERSQKTDK
SEFYPTIDVSVGLQELDLLLAEWQHYYNWERPHSSLNGLTPIDRITEISDQTPLSEEVSQNYQIKKERFQEQNYKLDLQL
RKLKPSL
>Mature_326_residues
SMDREIQQRLQWVKMYEECGDAGLVCRRCGISRPTLRKWAKRYKQCGIAGLESQSRRPHSSPDTKLTDELRALILTMRDK
RNLGARRLQTELIRLHKIHLSTATLHKVLSEASVKPIVTYRRKKDFQRYERPIPGDRVQMDTCKIAPGIYQYTAIDDCSR
YRVLRCYSRRTAANTVDFIDCVVEEMPFPIQRIQTDRGREFFAEKVQKQLMIYGIKFRPNKPGSPHLNGKVERSQKTDKS
EFYPTIDVSVGLQELDLLLAEWQHYYNWERPHSSLNGLTPIDRITEISDQTPLSEEVSQNYQIKKERFQEQNYKLDLQLR
KLKPSL

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=270, Percent_Identity=27.7777777777778, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 38468; Mature: 38337

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMDREIQQRLQWVKMYEECGDAGLVCRRCGISRPTLRKWAKRYKQCGIAGLESQSRRPH
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
SSPDTKLTDELRALILTMRDKRNLGARRLQTELIRLHKIHLSTATLHKVLSEASVKPIVT
CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
YRRKKDFQRYERPIPGDRVQMDTCKIAPGIYQYTAIDDCSRYRVLRCYSRRTAANTVDFI
HHHHHHHHHHCCCCCCCCEEECHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
DCVVEEMPFPIQRIQTDRGREFFAEKVQKQLMIYGIKFRPNKPGSPHLNGKVERSQKTDK
HHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCHHHCCCH
SEFYPTIDVSVGLQELDLLLAEWQHYYNWERPHSSLNGLTPIDRITEISDQTPLSEEVSQ
HHCCCEEEHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHC
NYQIKKERFQEQNYKLDLQLRKLKPSL
CCHHHHHHHHHCCCEEEEEECCCCCCC
>Mature Secondary Structure 
SMDREIQQRLQWVKMYEECGDAGLVCRRCGISRPTLRKWAKRYKQCGIAGLESQSRRPH
CCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
SSPDTKLTDELRALILTMRDKRNLGARRLQTELIRLHKIHLSTATLHKVLSEASVKPIVT
CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
YRRKKDFQRYERPIPGDRVQMDTCKIAPGIYQYTAIDDCSRYRVLRCYSRRTAANTVDFI
HHHHHHHHHHCCCCCCCCEEECHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
DCVVEEMPFPIQRIQTDRGREFFAEKVQKQLMIYGIKFRPNKPGSPHLNGKVERSQKTDK
HHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCHHHCCCH
SEFYPTIDVSVGLQELDLLLAEWQHYYNWERPHSSLNGLTPIDRITEISDQTPLSEEVSQ
HHCCCEEEHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHC
NYQIKKERFQEQNYKLDLQLRKLKPSL
CCHHHHHHHHHCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 8113168 [H]