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The map label for this gene is ygjH [H]

Identifier: 147674584

GI number: 147674584

Start: 2039210

End: 2039554

Strand: Reverse

Name: ygjH [H]

Synonym: VC0395_A1914

Alternate gene names: 147674584

Gene position: 2039554-2039210 (Counterclockwise)

Preceding gene: 147673874

Following gene: 147675158

Centisome position: 67.44

GC content: 50.14

Gene sequence:

>345_bases
ATGGACTCGGCGTTTTTGACGGTAGGGTACGATGATTTTGCGCGGCTGGATTTACGTATTGGCACCATTGTTGAGGCAAA
GCTTCATCCTCGTTCGACCCGCAACTATATTGTGCAGATTGCGTTGGGAGAGCAGATGTTGCAAGCCGTCACCGCGTTAG
CACCTTATTACTCGGCAGAACAATTACTCAATCAACAAGTGGTGGTGCTGTGCAATCTCAAACCGAGCTTGGTAGCTGGT
GTAGAATCCCACTGCATGCTGCTGTGCGCGGAAACGCAAGATGGAGAAGAGAGTGTATTGCTCACCCCACAACGGATTAT
CGCCAATGGGGTGAGAATCGTTTAG

Upstream 100 bases:

>100_bases
GTAACTGAGTACATAAGAGTGAATTGTGAGCCATGACGCTTGTTCAACAGGGATTGGCGTAAAGTGTAAACGTTTTTAAT
GATTAAGAAGGATAAGAGTT

Downstream 100 bases:

>100_bases
CGTACTGCGGCAATCAGTTGATCAATCAAGCCATGCTGCTCCGGTTTTACCCCCGCCAAGTTGCCGTATTTGGGGGCGTG
GCGGTCATTGTCTAACGGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MDSAFLTVGYDDFARLDLRIGTIVEAKLHPRSTRNYIVQIALGEQMLQAVTALAPYYSAEQLLNQQVVVLCNLKPSLVAG
VESHCMLLCAETQDGEESVLLTPQRIIANGVRIV

Sequences:

>Translated_114_residues
MDSAFLTVGYDDFARLDLRIGTIVEAKLHPRSTRNYIVQIALGEQMLQAVTALAPYYSAEQLLNQQVVVLCNLKPSLVAG
VESHCMLLCAETQDGEESVLLTPQRIIANGVRIV
>Mature_114_residues
MDSAFLTVGYDDFARLDLRIGTIVEAKLHPRSTRNYIVQIALGEQMLQAVTALAPYYSAEQLLNQQVVVLCNLKPSLVAG
VESHCMLLCAETQDGEESVLLTPQRIIANGVRIV

Specific function: Unknown

COG id: COG0073

COG function: function code R; EMAP domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 tRNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI215490011, Length=103, Percent_Identity=37.8640776699029, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI215490009, Length=104, Percent_Identity=37.5, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI45006986, Length=104, Percent_Identity=37.5, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI4507947, Length=81, Percent_Identity=41.9753086419753, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1789455, Length=108, Percent_Identity=57.4074074074074, Blast_Score=135, Evalue=9e-34,
Organism=Caenorhabditis elegans, GI17540794, Length=87, Percent_Identity=41.3793103448276, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24651924, Length=93, Percent_Identity=40.8602150537634, Blast_Score=69, Evalue=5e-13,
Organism=Drosophila melanogaster, GI21357223, Length=81, Percent_Identity=39.5061728395062, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR002547 [H]

Pfam domain/function: PF01588 tRNA_bind [H]

EC number: NA

Molecular weight: Translated: 12531; Mature: 12531

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: PS50886 TRBD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSAFLTVGYDDFARLDLRIGTIVEAKLHPRSTRNYIVQIALGEQMLQAVTALAPYYSAE
CCCEEEEECCCCCEEEEEEECEEEEEEECCCCCCEEEEEEEHHHHHHHHHHHHCCCCCHH
QLLNQQVVVLCNLKPSLVAGVESHCMLLCAETQDGEESVLLTPQRIIANGVRIV
HHCCCEEEEEECCCCHHHHCCCCCEEEEEECCCCCCCEEEECHHHHHHCCCCCC
>Mature Secondary Structure
MDSAFLTVGYDDFARLDLRIGTIVEAKLHPRSTRNYIVQIALGEQMLQAVTALAPYYSAE
CCCEEEEECCCCCEEEEEEECEEEEEEECCCCCCEEEEEEEHHHHHHHHHHHHCCCCCHH
QLLNQQVVVLCNLKPSLVAGVESHCMLLCAETQDGEESVLLTPQRIIANGVRIV
HHCCCEEEEEECCCCHHHHCCCCCEEEEEECCCCCCCEEEECHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]