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The map label for this gene is yjjV [H]

Identifier: 147674354

GI number: 147674354

Start: 2063127

End: 2063978

Strand: Reverse

Name: yjjV [H]

Synonym: VC0395_A1932

Alternate gene names: 147674354

Gene position: 2063978-2063127 (Counterclockwise)

Preceding gene: 147673145

Following gene: 147673370

Centisome position: 68.25

GC content: 50.35

Gene sequence:

>852_bases
GTGTTCCTTATCGAAAAGATCCGGCCAATGAACGAGACGATTCCACCTCCGCTTGAATGGTCGTTGTTCGACACCCATTG
CCACTTTGATTTTCCTCCGTTTACTGCCACCCCTGAGCTGGAATTGCAAAAAGCGGCGCAGCATGGAGTTAGGCGGCTCG
TTGTGCCATCGATTGGGCCGCAAGATTGGCAGGCGGTGACTGAGCTGGCGCAGCGCTTTCCCTCAACCATTTACTATGCG
TTGGGATTTCATCCACTCTATTTAGATGCCTCTTCACCGACCCATTTACCTGCGTTAGAAAAGGCTCTAATGCAGGCAGA
ACAGGCTTGTGTAGCCGTTGGGGAGTGCGGTTTAGATGGCATGATAGACGTCGATGTGGCGCTACAAGAGCAGATGCTGA
TCGCCCAGCTCTCTATGGCCTCACAGGCCAAACTACCCGTGATCCTGCATAGCCGACGTACTCACAATCGGTTGTTACAG
TTATTGAAACAGCAGCGTTTTCAACAAGGTGGTGTGCTGCATGCTTTTTCTGGCAGTGTGCAAGAAGCGCAGCAGTTTGT
AGACCTAGGGTTTAAGATTGGTGTGGGAGGCGTCATCACTTACCCAAGAGCCAATAAAACTCGGCAAGCCATCGCAGCGT
TACCTGTAGAGCACATAGTGTTAGAGACGGACGCGCCTGATATGCCACTGAATGGTTTTCAAGGTCAGGCTAACCATCCG
GCTCAATTAGCCAAGGTTTTAGAAACACTCGCCGAGCTAAAAGGTGTTTCAGCACAATATCTCGCGCCAATCCTCTGGCA
AAACAGTCAAATGCTGTTTGGCTTGTGTGAACAAAACCGAAACAAGATGTAG

Upstream 100 bases:

>100_bases
AATAAGGAACACATGATGTGGCTATGGTTAAAACGTTGGATTGCGAAATACGATGCTTGGTGCCAAAGCATGGGGTTAAT
GCCGGGGCAAAAGCGCAGTT

Downstream 100 bases:

>100_bases
CGTTAATGACGCATCTGTCACTAAAAGTTGAGTGGTGTCACAGATATTAGTGAACGCGTGATGAATCTTATCCGAAAGTG
TGAATCCTGCATTACTTTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MFLIEKIRPMNETIPPPLEWSLFDTHCHFDFPPFTATPELELQKAAQHGVRRLVVPSIGPQDWQAVTELAQRFPSTIYYA
LGFHPLYLDASSPTHLPALEKALMQAEQACVAVGECGLDGMIDVDVALQEQMLIAQLSMASQAKLPVILHSRRTHNRLLQ
LLKQQRFQQGGVLHAFSGSVQEAQQFVDLGFKIGVGGVITYPRANKTRQAIAALPVEHIVLETDAPDMPLNGFQGQANHP
AQLAKVLETLAELKGVSAQYLAPILWQNSQMLFGLCEQNRNKM

Sequences:

>Translated_283_residues
MFLIEKIRPMNETIPPPLEWSLFDTHCHFDFPPFTATPELELQKAAQHGVRRLVVPSIGPQDWQAVTELAQRFPSTIYYA
LGFHPLYLDASSPTHLPALEKALMQAEQACVAVGECGLDGMIDVDVALQEQMLIAQLSMASQAKLPVILHSRRTHNRLLQ
LLKQQRFQQGGVLHAFSGSVQEAQQFVDLGFKIGVGGVITYPRANKTRQAIAALPVEHIVLETDAPDMPLNGFQGQANHP
AQLAKVLETLAELKGVSAQYLAPILWQNSQMLFGLCEQNRNKM
>Mature_283_residues
MFLIEKIRPMNETIPPPLEWSLFDTHCHFDFPPFTATPELELQKAAQHGVRRLVVPSIGPQDWQAVTELAQRFPSTIYYA
LGFHPLYLDASSPTHLPALEKALMQAEQACVAVGECGLDGMIDVDVALQEQMLIAQLSMASQAKLPVILHSRRTHNRLLQ
LLKQQRFQQGGVLHAFSGSVQEAQQFVDLGFKIGVGGVITYPRANKTRQAIAALPVEHIVLETDAPDMPLNGFQGQANHP
AQLAKVLETLAELKGVSAQYLAPILWQNSQMLFGLCEQNRNKM

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=263, Percent_Identity=25.0950570342205, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI110349730, Length=265, Percent_Identity=29.811320754717, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI110349734, Length=265, Percent_Identity=29.811320754717, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI226061853, Length=270, Percent_Identity=29.2592592592593, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI225903439, Length=244, Percent_Identity=25.8196721311475, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI226061614, Length=258, Percent_Identity=27.5193798449612, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI225903424, Length=282, Percent_Identity=26.241134751773, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI226061595, Length=222, Percent_Identity=29.7297297297297, Blast_Score=68, Evalue=9e-12,
Organism=Escherichia coli, GI87082439, Length=255, Percent_Identity=49.4117647058824, Blast_Score=238, Evalue=2e-64,
Organism=Escherichia coli, GI1787342, Length=258, Percent_Identity=29.8449612403101, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI48994985, Length=263, Percent_Identity=29.6577946768061, Blast_Score=103, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17559024, Length=284, Percent_Identity=27.112676056338, Blast_Score=114, Evalue=8e-26,
Organism=Caenorhabditis elegans, GI71980746, Length=262, Percent_Identity=24.4274809160305, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI221330018, Length=267, Percent_Identity=27.3408239700375, Blast_Score=91, Evalue=9e-19,
Organism=Drosophila melanogaster, GI24586117, Length=267, Percent_Identity=27.3408239700375, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24648690, Length=264, Percent_Identity=26.5151515151515, Blast_Score=86, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 31421; Mature: 31421

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLIEKIRPMNETIPPPLEWSLFDTHCHFDFPPFTATPELELQKAAQHGVRRLVVPSIGP
CCCHHHCCCCCCCCCCCCCEEEEECEECCCCCCCCCCCCHHHHHHHHHCHHEEECCCCCC
QDWQAVTELAQRFPSTIYYALGFHPLYLDASSPTHLPALEKALMQAEQACVAVGECGLDG
HHHHHHHHHHHHCCHHEEHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
MIDVDVALQEQMLIAQLSMASQAKLPVILHSRRTHNRLLQLLKQQRFQQGGVLHAFSGSV
EEEHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCEEEECCCCH
QEAQQFVDLGFKIGVGGVITYPRANKTRQAIAALPVEHIVLETDAPDMPLNGFQGQANHP
HHHHHHHHCCCEECCCCEEECCCCCHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCH
AQLAKVLETLAELKGVSAQYLAPILWQNSQMLFGLCEQNRNKM
HHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MFLIEKIRPMNETIPPPLEWSLFDTHCHFDFPPFTATPELELQKAAQHGVRRLVVPSIGP
CCCHHHCCCCCCCCCCCCCEEEEECEECCCCCCCCCCCCHHHHHHHHHCHHEEECCCCCC
QDWQAVTELAQRFPSTIYYALGFHPLYLDASSPTHLPALEKALMQAEQACVAVGECGLDG
HHHHHHHHHHHHCCHHEEHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
MIDVDVALQEQMLIAQLSMASQAKLPVILHSRRTHNRLLQLLKQQRFQQGGVLHAFSGSV
EEEHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCEEEECCCCH
QEAQQFVDLGFKIGVGGVITYPRANKTRQAIAALPVEHIVLETDAPDMPLNGFQGQANHP
HHHHHHHHCCCEECCCCEEECCCCCHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCH
AQLAKVLETLAELKGVSAQYLAPILWQNSQMLFGLCEQNRNKM
HHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]