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The map label for this gene is deoB

Identifier: 147674309

GI number: 147674309

Start: 2057631

End: 2058851

Strand: Reverse

Name: deoB

Synonym: VC0395_A1927

Alternate gene names: 147674309

Gene position: 2058851-2057631 (Counterclockwise)

Preceding gene: 147673836

Following gene: 147673694

Centisome position: 68.08

GC content: 50.78

Gene sequence:

>1221_bases
ATGAAAAGAGCATTTATTTTAGTTTTAGACTCGTTTGGCATTGGCGCAACAGCGGATGCACAAGCCTTTGGTGATGTCGG
TTCTGATACCTTAGGCCACATCGCGGATCAATGTGCGCAAGGTTTGGCGGATAACGCAGAACGTAAAGGCGCATTGCAAC
TGCCGAACCTTTCTAAGCTGGGTTTGGCGATGGCGCATAAAGAGTCGACCGGACGTTTTGCGCCGGGGCTGGATGAGCGT
GCGGATATCATCGGCGCTTATGCCCATGCCGCAGAGCTGTCATCAGGCAAAGATACTCCGTCAGGTCACTGGGAAATTGC
TGGTGTGCCAGTGCTGTTTGAATGGGGTTACTTTAGCGATAAGCAAAATAGCTTCCCGAAAGAGCTGACCGATCGCATTT
TAGCGCGCGCGGGTTTGGACGGATTTTTAGGCAACTGCCACGCCTCTGGTACGCAAGTGCTGGATGATTTGGGCGAAGAG
CATATGCGTACGGGCAAGCCGATTTTCTACACCTCGGCAGATTCTGTATTCCAAATTGCCTGCCACGAAGAGACATTTGG
TTTAGCTCGTCTGCTGGAGCTTTGCCAAATCGCTCGTGAAGAGCTGGCGGATTACAACATCGGTCGCGTCATTGCGCGTC
CATTCGTTGGCCCGGGCAAAGGACAATTTGCTCGTACCGGTAATCGCCGTGATTTGTCGGTTGAGCCCCCTTCAGCCACA
GTGTTGCAAAAGTTGGTGGAAGAGAAGCAAGGCCGAGTGGTGTCTATCGGTAAAATTGCCGATATCTACGCGTACTGCGG
CATTACCGACAAAGTCAAAGCGACGGGCATTCCAGATCTGTTTGAAGCGACTTTAGAGCAGATCAAACAAGCCGGTGATA
ACACCATCGTATTCACTAACTTTGTGGATTTTGACTCGGCTTATGGTCACCGCCGTGATGTCGCAGGTTATGCGGCGGCA
CTGGAGTATTTCGATAAGCGTTTACCTGAAGTTCTAGCGCTGATGCAGGAAGATGACATTCTGATTTTAACTGCCGACCA
CGGCTGTGACCCAACATGGCCGGGCACTGACCATACTCGTGAACACATTCCGGTACTGGTTTATGGCAAGAAAGTGGCTC
CGGGTTCATTAGGTCGTCGTGACACTTTTGCTGATATCGGGCAAACTCTGGCAAGCTACTTTGGCACTTCGCCAATGGAT
TACGGTAAGAACTTTTTATAA

Upstream 100 bases:

>100_bases
CACTACAAAGTGCGATTAAAGTGGGCGGTGATTACCTACCAACACCGGATGTTTACCGTCAAATTCGAGCACAAGACGTG
TAAGTTCGGGGGAGTGAGCA

Downstream 100 bases:

>100_bases
TACGCATACCCTAAGGCTAGCTTCAGTCTTAGGGTTTTGTTGAATGATGGCGATTGAGCCAACAAACCAAAGGAACGAAA
ACATGGCAACTCCACATATT

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MKRAFILVLDSFGIGATADAQAFGDVGSDTLGHIADQCAQGLADNAERKGALQLPNLSKLGLAMAHKESTGRFAPGLDER
ADIIGAYAHAAELSSGKDTPSGHWEIAGVPVLFEWGYFSDKQNSFPKELTDRILARAGLDGFLGNCHASGTQVLDDLGEE
HMRTGKPIFYTSADSVFQIACHEETFGLARLLELCQIAREELADYNIGRVIARPFVGPGKGQFARTGNRRDLSVEPPSAT
VLQKLVEEKQGRVVSIGKIADIYAYCGITDKVKATGIPDLFEATLEQIKQAGDNTIVFTNFVDFDSAYGHRRDVAGYAAA
LEYFDKRLPEVLALMQEDDILILTADHGCDPTWPGTDHTREHIPVLVYGKKVAPGSLGRRDTFADIGQTLASYFGTSPMD
YGKNFL

Sequences:

>Translated_406_residues
MKRAFILVLDSFGIGATADAQAFGDVGSDTLGHIADQCAQGLADNAERKGALQLPNLSKLGLAMAHKESTGRFAPGLDER
ADIIGAYAHAAELSSGKDTPSGHWEIAGVPVLFEWGYFSDKQNSFPKELTDRILARAGLDGFLGNCHASGTQVLDDLGEE
HMRTGKPIFYTSADSVFQIACHEETFGLARLLELCQIAREELADYNIGRVIARPFVGPGKGQFARTGNRRDLSVEPPSAT
VLQKLVEEKQGRVVSIGKIADIYAYCGITDKVKATGIPDLFEATLEQIKQAGDNTIVFTNFVDFDSAYGHRRDVAGYAAA
LEYFDKRLPEVLALMQEDDILILTADHGCDPTWPGTDHTREHIPVLVYGKKVAPGSLGRRDTFADIGQTLASYFGTSPMD
YGKNFL
>Mature_406_residues
MKRAFILVLDSFGIGATADAQAFGDVGSDTLGHIADQCAQGLADNAERKGALQLPNLSKLGLAMAHKESTGRFAPGLDER
ADIIGAYAHAAELSSGKDTPSGHWEIAGVPVLFEWGYFSDKQNSFPKELTDRILARAGLDGFLGNCHASGTQVLDDLGEE
HMRTGKPIFYTSADSVFQIACHEETFGLARLLELCQIAREELADYNIGRVIARPFVGPGKGQFARTGNRRDLSVEPPSAT
VLQKLVEEKQGRVVSIGKIADIYAYCGITDKVKATGIPDLFEATLEQIKQAGDNTIVFTNFVDFDSAYGHRRDVAGYAAA
LEYFDKRLPEVLALMQEDDILILTADHGCDPTWPGTDHTREHIPVLVYGKKVAPGSLGRRDTFADIGQTLASYFGTSPMD
YGKNFL

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family

Homologues:

Organism=Escherichia coli, GI1790843, Length=405, Percent_Identity=75.8024691358025, Blast_Score=643, Evalue=0.0,
Organism=Escherichia coli, GI1789781, Length=449, Percent_Identity=29.6213808463252, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOB_VIBC3 (A5F5U0)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- ProteinModelPortal:   A5F5U0
- SMR:   A5F5U0
- STRING:   A5F5U0
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A1927
- eggNOG:   COG1015
- HOGENOM:   HBG644230
- OMA:   CHASGTE
- ProtClustDB:   PRK05362
- BioCyc:   VCHO345073:VC0395_A1927-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00740
- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124
- Gene3D:   G3DSA:3.40.720.10
- PIRSF:   PIRSF001491
- TIGRFAMs:   TIGR01696

Pfam domain/function: PF01676 Metalloenzyme; SSF53649 Alkaline_phosphatase_core

EC number: =5.4.2.7

Molecular weight: Translated: 44051; Mature: 44051

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRAFILVLDSFGIGATADAQAFGDVGSDTLGHIADQCAQGLADNAERKGALQLPNLSKL
CCCEEEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCHHCCCCEECCCCHHH
GLAMAHKESTGRFAPGLDERADIIGAYAHAAELSSGKDTPSGHWEIAGVPVLFEWGYFSD
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCC
KQNSFPKELTDRILARAGLDGFLGNCHASGTQVLDDLGEEHMRTGKPIFYTSADSVFQIA
CCCCCHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEE
CHEETFGLARLLELCQIAREELADYNIGRVIARPFVGPGKGQFARTGNRRDLSVEPPSAT
ECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHH
VLQKLVEEKQGRVVSIGKIADIYAYCGITDKVKATGIPDLFEATLEQIKQAGDNTIVFTN
HHHHHHHHHCCCEEEECHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEE
FVDFDSAYGHRRDVAGYAAALEYFDKRLPEVLALMQEDDILILTADHGCDPTWPGTDHTR
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCH
EHIPVLVYGKKVAPGSLGRRDTFADIGQTLASYFGTSPMDYGKNFL
HCCCEEEECCEECCCCCCCCHHHHHHHHHHHHHHCCCCHHCCCCCC
>Mature Secondary Structure
MKRAFILVLDSFGIGATADAQAFGDVGSDTLGHIADQCAQGLADNAERKGALQLPNLSKL
CCCEEEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCHHCCCCEECCCCHHH
GLAMAHKESTGRFAPGLDERADIIGAYAHAAELSSGKDTPSGHWEIAGVPVLFEWGYFSD
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCC
KQNSFPKELTDRILARAGLDGFLGNCHASGTQVLDDLGEEHMRTGKPIFYTSADSVFQIA
CCCCCHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEE
CHEETFGLARLLELCQIAREELADYNIGRVIARPFVGPGKGQFARTGNRRDLSVEPPSAT
ECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHH
VLQKLVEEKQGRVVSIGKIADIYAYCGITDKVKATGIPDLFEATLEQIKQAGDNTIVFTN
HHHHHHHHHCCCEEEECHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEE
FVDFDSAYGHRRDVAGYAAALEYFDKRLPEVLALMQEDDILILTADHGCDPTWPGTDHTR
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCH
EHIPVLVYGKKVAPGSLGRRDTFADIGQTLASYFGTSPMDYGKNFL
HCCCEEEECCEECCCCCCCCHHHHHHHHHHHHHHCCCCHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA