Click here to switch to the map view.

The map label for this gene is nqrD [H]

Identifier: 147673905

GI number: 147673905

Start: 2000129

End: 2000761

Strand: Reverse

Name: nqrD [H]

Synonym: VC0395_A1881

Alternate gene names: 147673905

Gene position: 2000761-2000129 (Counterclockwise)

Preceding gene: 147673911

Following gene: 147674521

Centisome position: 66.16

GC content: 45.34

Gene sequence:

>633_bases
ATGTCTAGCGCAAAAGAGCTGAAAAAGAGTGTGTTAGCCCCAGTTTTGGACAACAACCCGATTGCACTGCAAGTTCTGGG
TGTGTGTTCTGCACTGGCGGTAACCACTAAGCTGGAAACGGCATTTGTTATGACGCTAGCGGTAATGTTTGTTACTGCAT
TGTCTAACTTCTTCGTTTCTCTGATCCGTAACCACATTCCTAACAGTGTGCGTATTATCGTACAAATGGCGATTATCGCT
TCGTTAGTTATCGTGGTAGACCAGATTCTGAAAGCGTATCTGTACGATATTTCTAAGCAACTGTCGGTATTCGTTGGTCT
GATTATCACCAACTGTATCGTAATGGGTCGTGCAGAAGCGTTTGCAATGAAGTCTGAACCAATTCCTTCTTTCATTGATG
GTATTGGTAACGGTTTAGGATACGGTTTCGTGCTGATGACGGTTGGTTTCTTCCGTGAGCTTTTAGGCTCAGGTAAGCTA
TTTGGCTTGGAAGTTCTGCCTCTGATCAGCAACGGTGGTTGGTATCAGCCAAACGGCCTGATGCTACTCGCACCTTCAGC
ATTCTTCCTGATCGGCTTCATGATTTGGGCGATTCGCACGTTCAAACCAGAACAAGTAGAAGCGAAGGAGTAA

Upstream 100 bases:

>100_bases
CTTTGACCAGTAATGGCGTACAAAACACCTTCGACTTCTGGTTGGGTGATATGGGCTTTGGTCCATTCCTGACAAAAGTT
CGTGACGGAGGTCTTAACTA

Downstream 100 bases:

>100_bases
GGTTGTCATGGAACATTATATTAGTCTGCTGGTGAAATCGATTTTCATCGAGAACATGGCACTCTCTTTCTTCCTAGGGA
TGTGTACATTCTTGGCGGTG

Product: Na(+)-translocating NADH-quinone reductase subunit D

Products: NA

Alternate protein names: Na(+)-NQR subunit D; Na(+)-translocating NQR subunit D; NQR complex subunit D; NQR-1 subunit D [H]

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MSSAKELKKSVLAPVLDNNPIALQVLGVCSALAVTTKLETAFVMTLAVMFVTALSNFFVSLIRNHIPNSVRIIVQMAIIA
SLVIVVDQILKAYLYDISKQLSVFVGLIITNCIVMGRAEAFAMKSEPIPSFIDGIGNGLGYGFVLMTVGFFRELLGSGKL
FGLEVLPLISNGGWYQPNGLMLLAPSAFFLIGFMIWAIRTFKPEQVEAKE

Sequences:

>Translated_210_residues
MSSAKELKKSVLAPVLDNNPIALQVLGVCSALAVTTKLETAFVMTLAVMFVTALSNFFVSLIRNHIPNSVRIIVQMAIIA
SLVIVVDQILKAYLYDISKQLSVFVGLIITNCIVMGRAEAFAMKSEPIPSFIDGIGNGLGYGFVLMTVGFFRELLGSGKL
FGLEVLPLISNGGWYQPNGLMLLAPSAFFLIGFMIWAIRTFKPEQVEAKE
>Mature_209_residues
SSAKELKKSVLAPVLDNNPIALQVLGVCSALAVTTKLETAFVMTLAVMFVTALSNFFVSLIRNHIPNSVRIIVQMAIIAS
LVIVVDQILKAYLYDISKQLSVFVGLIITNCIVMGRAEAFAMKSEPIPSFIDGIGNGLGYGFVLMTVGFFRELLGSGKLF
GLEVLPLISNGGWYQPNGLMLLAPSAFFLIGFMIWAIRTFKPEQVEAKE

Specific function: NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to nqrE are probably involved in the second step, the conversion of ubisemiqui

COG id: COG1347

COG function: function code C; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=203, Percent_Identity=35.9605911330049, Blast_Score=107, Evalue=8e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011292 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 22838; Mature: 22706

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSAKELKKSVLAPVLDNNPIALQVLGVCSALAVTTKLETAFVMTLAVMFVTALSNFFVS
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIRNHIPNSVRIIVQMAIIASLVIVVDQILKAYLYDISKQLSVFVGLIITNCIVMGRAEA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
FAMKSEPIPSFIDGIGNGLGYGFVLMTVGFFRELLGSGKLFGLEVLPLISNGGWYQPNGL
HHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEHHEEEEEECCCCEECCCCE
MLLAPSAFFLIGFMIWAIRTFKPEQVEAKE
EEECCHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SSAKELKKSVLAPVLDNNPIALQVLGVCSALAVTTKLETAFVMTLAVMFVTALSNFFVS
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIRNHIPNSVRIIVQMAIIASLVIVVDQILKAYLYDISKQLSVFVGLIITNCIVMGRAEA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
FAMKSEPIPSFIDGIGNGLGYGFVLMTVGFFRELLGSGKLFGLEVLPLISNGGWYQPNGL
HHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEHHEEEEEECCCCEECCCCE
MLLAPSAFFLIGFMIWAIRTFKPEQVEAKE
EEECCHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7805867; 7729558; 9490015; 10549856; 11248187; 11248188 [H]