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The map label for this gene is cph2 [H]

Identifier: 147673373

GI number: 147673373

Start: 2081021

End: 2082760

Strand: Reverse

Name: cph2 [H]

Synonym: VC0395_A1949

Alternate gene names: 147673373

Gene position: 2082760-2081021 (Counterclockwise)

Preceding gene: 147675264

Following gene: 147673942

Centisome position: 68.87

GC content: 49.43

Gene sequence:

>1740_bases
ATGCCTGAATTTCTCTCTGAATTTGTACGTTTCTTGTTCGCTGCCGGGCTTGTGCTTGGTGGTGGGTTATGGCTTTTTTC
AGGATGGCAGCGCTATGTTCAACCTCAACAGTGGATTCAGTTACTTCACCATGCACCGTCAGGGATGCTCTTGGTAGGAG
AGGATCGCGTTTTACGTGCCAATCTTGCCGCGTATTTGTTACTGGGGATCCGCTTGGTGGGACGTCACTATCTGTTTTCT
GCCGAGCAGAGTGAAGAGAGTCAGCAAGCTTTTTATCGAGCGCTCGCCAGCAGTGCACAGCAAAAGCGTTCCGTCCCTCT
GCTTTGGCCTGTGCCGGGCAATTTGACCCAAACTCTAGAGATCTCAGCTTCGCTCTTACGTCGTTGGCCGAAGAAATTAT
GGCTAGTGAATGTGATTGGTTTTGAGTGTCCCAGCCATGACATTCAACAAGAGCGCCACTCACTGGCGATAGCGCGCACG
GCACTTGATTCCCTCTCCGAGCTGATTTTTATTAAAAGTACCGAAGGCCACTTAATCGCAACCAACCGAGCGTTTGATCA
GTTTTGGCAAGGCCGGATTGAAGAGGGCAGCGCTACTTTTAAAGGCATTATGAAAGGGCGCACGAGTCAGCGTTGCTGGA
CTGTGACGCCTGATGGGCGCAGCTGTCTGTTAGAAACCTACCAACGGGTATTGATGTCGCCGCAAGGTGAAAATATTGGG
CTACTTGGCATCAGTCATGATGTGACCGACTGGTACAACATGCAGCGTCAATTAAGAGAAGAGATGGAAAAACGCCGTGA
CACCGAAGTGGCATTGGCACAGCGCGATACGATTTTACAAAACATCTTAGAATCTAGCCCCGATTCGATTGGTATCTTCA
ATGAAAACATGGTCTACCAAGCCTGTAACCAGCCGTTTGTGGAAGCTCTCGGGATCGCGGAAGTGTCAGATCTGGTTGGT
AAACGGCTGCAAGATGTGATCCCCGAGCACATCTATGCGCGTCTTTCCGATACGGATAGCCAAGTCCTGCACCAAGGTAA
GTCTCTGCGCTACATCGACAGAATTGAACGCTCAGATGGTGAGTTTATCTGGTTTGATGTTGTGAAATCGCCTTTTCGAG
ATCCGGCTTCGGGCACCAATGGCGTGCTGATCATGGCGCGAGATGTGTCGGAGCGCTATCTCGCCGCTGAACAATTAGAA
GCCGCCAACCAAGAGCTGGAACGCCTAAGCTTTTTAGATAGCTTGACTCATGTTGCCAATCGTCGTCGTTTTGATGAACA
ACTGCATACCCTCTGGCATTTGCATGTGCGTGAAGGCAAACCATTAAGCATCATTCTGTGTGATGTCGATTATTTCAAAG
ATTACAACGACGCTTATGGCCATTTGATGGGCGATGAGACGCTCAAACAGATAGCGATTGCCTTTACTCAAGTCGCCAAT
CGCCATTCTGATTGTGTTGCCCGCTACGGGGGAGAAGAGTTTGGTATTTTGCTGCCCAATACACCACAGTCCGGAGCAAT
ACTGGTCGCAGAGCGAATCCATGAGAAAGTTCGTGGATTAGCGATTCCACATGATCATTCTAAGGTTGCCGATAGGATTA
CCGTCAGCTTAGGCATAGTGACGCTTATTCCTCGGCCTGAGGATGTACCTGAGCAAATGGTTGAGCTAGCGGATCGGGCT
TTATACCAAGCCAAAGCGAATGGCCGCAATCAGACCTCAATTTATCAACCAAACCACTAA

Upstream 100 bases:

>100_bases
CCTTTTGAGTATTCACCTTTGAACTTAAAGTAATAATCCGCAGCAAAGTCAGATAATCTTTTGTACTATTTAAAGAATCA
TCAATAACACCGCTGAATGC

Downstream 100 bases:

>100_bases
AACTGTGCGGTTCGCCCTGTCACAGCGCCAAGAAGTGGATAAGTGCTGCTAACGTTTGTGTGGGAAAAAGGCTAGACTAA
GTGCTCTTTATCTGACGGAG

Product: sensory box/GGDEF family protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 579; Mature: 578

Protein sequence:

>579_residues
MPEFLSEFVRFLFAAGLVLGGGLWLFSGWQRYVQPQQWIQLLHHAPSGMLLVGEDRVLRANLAAYLLLGIRLVGRHYLFS
AEQSEESQQAFYRALASSAQQKRSVPLLWPVPGNLTQTLEISASLLRRWPKKLWLVNVIGFECPSHDIQQERHSLAIART
ALDSLSELIFIKSTEGHLIATNRAFDQFWQGRIEEGSATFKGIMKGRTSQRCWTVTPDGRSCLLETYQRVLMSPQGENIG
LLGISHDVTDWYNMQRQLREEMEKRRDTEVALAQRDTILQNILESSPDSIGIFNENMVYQACNQPFVEALGIAEVSDLVG
KRLQDVIPEHIYARLSDTDSQVLHQGKSLRYIDRIERSDGEFIWFDVVKSPFRDPASGTNGVLIMARDVSERYLAAEQLE
AANQELERLSFLDSLTHVANRRRFDEQLHTLWHLHVREGKPLSIILCDVDYFKDYNDAYGHLMGDETLKQIAIAFTQVAN
RHSDCVARYGGEEFGILLPNTPQSGAILVAERIHEKVRGLAIPHDHSKVADRITVSLGIVTLIPRPEDVPEQMVELADRA
LYQAKANGRNQTSIYQPNH

Sequences:

>Translated_579_residues
MPEFLSEFVRFLFAAGLVLGGGLWLFSGWQRYVQPQQWIQLLHHAPSGMLLVGEDRVLRANLAAYLLLGIRLVGRHYLFS
AEQSEESQQAFYRALASSAQQKRSVPLLWPVPGNLTQTLEISASLLRRWPKKLWLVNVIGFECPSHDIQQERHSLAIART
ALDSLSELIFIKSTEGHLIATNRAFDQFWQGRIEEGSATFKGIMKGRTSQRCWTVTPDGRSCLLETYQRVLMSPQGENIG
LLGISHDVTDWYNMQRQLREEMEKRRDTEVALAQRDTILQNILESSPDSIGIFNENMVYQACNQPFVEALGIAEVSDLVG
KRLQDVIPEHIYARLSDTDSQVLHQGKSLRYIDRIERSDGEFIWFDVVKSPFRDPASGTNGVLIMARDVSERYLAAEQLE
AANQELERLSFLDSLTHVANRRRFDEQLHTLWHLHVREGKPLSIILCDVDYFKDYNDAYGHLMGDETLKQIAIAFTQVAN
RHSDCVARYGGEEFGILLPNTPQSGAILVAERIHEKVRGLAIPHDHSKVADRITVSLGIVTLIPRPEDVPEQMVELADRA
LYQAKANGRNQTSIYQPNH
>Mature_578_residues
PEFLSEFVRFLFAAGLVLGGGLWLFSGWQRYVQPQQWIQLLHHAPSGMLLVGEDRVLRANLAAYLLLGIRLVGRHYLFSA
EQSEESQQAFYRALASSAQQKRSVPLLWPVPGNLTQTLEISASLLRRWPKKLWLVNVIGFECPSHDIQQERHSLAIARTA
LDSLSELIFIKSTEGHLIATNRAFDQFWQGRIEEGSATFKGIMKGRTSQRCWTVTPDGRSCLLETYQRVLMSPQGENIGL
LGISHDVTDWYNMQRQLREEMEKRRDTEVALAQRDTILQNILESSPDSIGIFNENMVYQACNQPFVEALGIAEVSDLVGK
RLQDVIPEHIYARLSDTDSQVLHQGKSLRYIDRIERSDGEFIWFDVVKSPFRDPASGTNGVLIMARDVSERYLAAEQLEA
ANQELERLSFLDSLTHVANRRRFDEQLHTLWHLHVREGKPLSIILCDVDYFKDYNDAYGHLMGDETLKQIAIAFTQVANR
HSDCVARYGGEEFGILLPNTPQSGAILVAERIHEKVRGLAIPHDHSKVADRITVSLGIVTLIPRPEDVPEQMVELADRAL
YQAKANGRNQTSIYQPNH

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=185, Percent_Identity=34.0540540540541, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1788381, Length=354, Percent_Identity=27.1186440677966, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI145693134, Length=171, Percent_Identity=35.0877192982456, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=33.9506172839506, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI87081881, Length=194, Percent_Identity=34.5360824742268, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1787541, Length=214, Percent_Identity=29.9065420560748, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787802, Length=212, Percent_Identity=30.6603773584906, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI87082007, Length=159, Percent_Identity=37.1069182389937, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI1787816, Length=167, Percent_Identity=37.125748502994, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1788085, Length=190, Percent_Identity=30.5263157894737, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI87081977, Length=183, Percent_Identity=32.2404371584699, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI48994928, Length=161, Percent_Identity=27.9503105590062, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787056, Length=167, Percent_Identity=31.1377245508982, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1788956, Length=170, Percent_Identity=31.1764705882353, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 65764; Mature: 65632

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEFLSEFVRFLFAAGLVLGGGLWLFSGWQRYVQPQQWIQLLHHAPSGMLLVGEDRVLRA
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEECCCCHHHH
NLAAYLLLGIRLVGRHYLFSAEQSEESQQAFYRALASSAQQKRSVPLLWPVPGNLTQTLE
HHHHHHHHHHHHHHHHHHCCCHHCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHH
ISASLLRRWPKKLWLVNVIGFECPSHDIQQERHSLAIARTALDSLSELIFIKSTEGHLIA
HHHHHHHHHHHHHEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEE
TNRAFDQFWQGRIEEGSATFKGIMKGRTSQRCWTVTPDGRSCLLETYQRVLMSPQGENIG
ECHHHHHHHCCCCCCCCHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCEE
LLGISHDVTDWYNMQRQLREEMEKRRDTEVALAQRDTILQNILESSPDSIGIFNENMVYQ
EEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHH
ACNQPFVEALGIAEVSDLVGKRLQDVIPEHIYARLSDTDSQVLHQGKSLRYIDRIERSDG
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHCCCC
EFIWFDVVKSPFRDPASGTNGVLIMARDVSERYLAAEQLEAANQELERLSFLDSLTHVAN
CEEEEEHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRRFDEQLHTLWHLHVREGKPLSIILCDVDYFKDYNDAYGHLMGDETLKQIAIAFTQVAN
HHHHHHHHHHHHHEEECCCCCEEEEEECCHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHC
RHSDCVARYGGEEFGILLPNTPQSGAILVAERIHEKVRGLAIPHDHSKVADRITVSLGIV
CHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHEEEEEEE
TLIPRPEDVPEQMVELADRALYQAKANGRNQTSIYQPNH
EECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
PEFLSEFVRFLFAAGLVLGGGLWLFSGWQRYVQPQQWIQLLHHAPSGMLLVGEDRVLRA
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEECCCCHHHH
NLAAYLLLGIRLVGRHYLFSAEQSEESQQAFYRALASSAQQKRSVPLLWPVPGNLTQTLE
HHHHHHHHHHHHHHHHHHCCCHHCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHH
ISASLLRRWPKKLWLVNVIGFECPSHDIQQERHSLAIARTALDSLSELIFIKSTEGHLIA
HHHHHHHHHHHHHEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEE
TNRAFDQFWQGRIEEGSATFKGIMKGRTSQRCWTVTPDGRSCLLETYQRVLMSPQGENIG
ECHHHHHHHCCCCCCCCHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCEE
LLGISHDVTDWYNMQRQLREEMEKRRDTEVALAQRDTILQNILESSPDSIGIFNENMVYQ
EEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHH
ACNQPFVEALGIAEVSDLVGKRLQDVIPEHIYARLSDTDSQVLHQGKSLRYIDRIERSDG
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHCCCC
EFIWFDVVKSPFRDPASGTNGVLIMARDVSERYLAAEQLEAANQELERLSFLDSLTHVAN
CEEEEEHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRRFDEQLHTLWHLHVREGKPLSIILCDVDYFKDYNDAYGHLMGDETLKQIAIAFTQVAN
HHHHHHHHHHHHHEEECCCCCEEEEEECCHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHC
RHSDCVARYGGEEFGILLPNTPQSGAILVAERIHEKVRGLAIPHDHSKVADRITVSLGIV
CHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHEEEEEEE
TLIPRPEDVPEQMVELADRALYQAKANGRNQTSIYQPNH
EECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]