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The map label for this gene is lpsB [H]

Identifier: 146343827

GI number: 146343827

Start: 7389509

End: 7390666

Strand: Reverse

Name: lpsB [H]

Synonym: BRADO7076

Alternate gene names: 146343827

Gene position: 7390666-7389509 (Counterclockwise)

Preceding gene: 146343828

Following gene: 146343826

Centisome position: 99.12

GC content: 67.79

Gene sequence:

>1158_bases
ATGATGTCGCGCGAACGCGTCCTGTTTGTCGATCACACCGGACAGATCGGCGGCGCCGAGCTGATCCTGCTCGACGTCGT
GCAGGGGCGCAACGAGTCTTCGGCGTTCCTGTTCGAGCGCGGACCGCTTGCCCAGGCGCTCGCCGAGCGCGGCCTGTCCG
TGATCACGTCGCGCTGGGGTCTCGGCCTGTCGACGTTCCGGCGCGACAGCTCGTGGATGAAGGCCTTGCCGCTGGCCGGC
GGCTTGGCCGCGATCACCGCCGAACTGGCGCGCGTCGCGCGCGGCCATGACGTCGTCTATGCCAATTCGCAGAAGGCCTT
CGTGCTGTCTGCGATCGCCAATGTCGTCGCGCGCAAGCCGCTGATCTGGCATCTGCATGACATCATCAGCCCGGTGCATT
TCGGCGCGATGCAGCGCCGGACGCAGGTGTTCCTGGCCAATCGCGTCGCCGCGAAGGTCATTGTCCCGTCGGAAGCGGCA
GCTGCCGCGTTCATCGCGGCGGGTGGACGGCGCGCGCTCGTGGAGATCGTGCCCAACGGTCTGTCCGTCGAACCCGTGCC
GGTGTCGCGGCAGGAACTGAGGCAGCGGCTCGGCCTGCCGTCGGGACCGTTGGTCGGCGTGTTCAGCCGGCTCGCCCAAT
GGAAGGGCCAGCATGTCCTGGTCGAAGCGCTGGCCCAACTGCCAGGCGTGCATGGCGTCATCGTCGGCGATGCGCTGTTC
GGCGAACAGGACTATGCGGCGCAGCTGAAGCGGCAGGTCGCCGAGCTCGGTCTCGCCGACCGCATTCATTTCCTTGGTCA
CCGCCGCGACGTGCCGCTGCTGATGCAGGCTGTCGACGTGATGGTCCATCCATCGATCGATCCGGAGCCGTTCGGCCGCA
CGCTGGTCGAGGCGATGCTGGCGGGTGTGCCGGTCATCGCCACCGATGCGGGAGCTGCGCCGGACATTCTGGAACATGGA
CGGGCCGGACTGCTCGTGCCTCCGGGCGATGCGCGGGCGCTGGCGGAAGCCTTGGACGCGGTGCTGTCGGAGCCGGCGAT
CCTCGAGCCGCAGCTCGTCTACGCATCGCGCCGCGCGCGGACACATTACAGCCTGTCGCGCATGCTCGATTCGATCGGAT
TGTTGATCCGCAATGTTCGTGCGGGAGCGGCGGTGTGA

Upstream 100 bases:

>100_bases
CGCTGGGCGCCGGCGATGTCGGCATCGTCGTCACGATGACCGAGTCCGAGAAGCGCGTGGCGTCCCACCCGGTCGCGGCT
GCAGCCTATGCCGAGGCCGG

Downstream 100 bases:

>100_bases
GCACGATCCTCACATCCGCGCCGGCCGCGCGCGACTGGCGCGTTCCCGGCTGGGCTGCGGCGATCGCCGTCCTCATGGCC
ACGGCGCTCGCGGCCGGCGT

Product: putative glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MMSRERVLFVDHTGQIGGAELILLDVVQGRNESSAFLFERGPLAQALAERGLSVITSRWGLGLSTFRRDSSWMKALPLAG
GLAAITAELARVARGHDVVYANSQKAFVLSAIANVVARKPLIWHLHDIISPVHFGAMQRRTQVFLANRVAAKVIVPSEAA
AAAFIAAGGRRALVEIVPNGLSVEPVPVSRQELRQRLGLPSGPLVGVFSRLAQWKGQHVLVEALAQLPGVHGVIVGDALF
GEQDYAAQLKRQVAELGLADRIHFLGHRRDVPLLMQAVDVMVHPSIDPEPFGRTLVEAMLAGVPVIATDAGAAPDILEHG
RAGLLVPPGDARALAEALDAVLSEPAILEPQLVYASRRARTHYSLSRMLDSIGLLIRNVRAGAAV

Sequences:

>Translated_385_residues
MMSRERVLFVDHTGQIGGAELILLDVVQGRNESSAFLFERGPLAQALAERGLSVITSRWGLGLSTFRRDSSWMKALPLAG
GLAAITAELARVARGHDVVYANSQKAFVLSAIANVVARKPLIWHLHDIISPVHFGAMQRRTQVFLANRVAAKVIVPSEAA
AAAFIAAGGRRALVEIVPNGLSVEPVPVSRQELRQRLGLPSGPLVGVFSRLAQWKGQHVLVEALAQLPGVHGVIVGDALF
GEQDYAAQLKRQVAELGLADRIHFLGHRRDVPLLMQAVDVMVHPSIDPEPFGRTLVEAMLAGVPVIATDAGAAPDILEHG
RAGLLVPPGDARALAEALDAVLSEPAILEPQLVYASRRARTHYSLSRMLDSIGLLIRNVRAGAAV
>Mature_385_residues
MMSRERVLFVDHTGQIGGAELILLDVVQGRNESSAFLFERGPLAQALAERGLSVITSRWGLGLSTFRRDSSWMKALPLAG
GLAAITAELARVARGHDVVYANSQKAFVLSAIANVVARKPLIWHLHDIISPVHFGAMQRRTQVFLANRVAAKVIVPSEAA
AAAFIAAGGRRALVEIVPNGLSVEPVPVSRQELRQRLGLPSGPLVGVFSRLAQWKGQHVLVEALAQLPGVHGVIVGDALF
GEQDYAAQLKRQVAELGLADRIHFLGHRRDVPLLMQAVDVMVHPSIDPEPFGRTLVEAMLAGVPVIATDAGAAPDILEHG
RAGLLVPPGDARALAEALDAVLSEPAILEPQLVYASRRARTHYSLSRMLDSIGLLIRNVRAGAAV

Specific function: Acts at transfer of mannose group to a 3-deoxy-D-mono octulonic acid (KDO) via an alpha-1,5 linkage [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 41217; Mature: 41217

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSRERVLFVDHTGQIGGAELILLDVVQGRNESSAFLFERGPLAQALAERGLSVITSRWG
CCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHC
LGLSTFRRDSSWMKALPLAGGLAAITAELARVARGHDVVYANSQKAFVLSAIANVVARKP
CCHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
LIWHLHDIISPVHFGAMQRRTQVFLANRVAAKVIVPSEAAAAAFIAAGGRRALVEIVPNG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHCCCCEEEEEECCCC
LSVEPVPVSRQELRQRLGLPSGPLVGVFSRLAQWKGQHVLVEALAQLPGVHGVIVGDALF
CCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEECHHH
GEQDYAAQLKRQVAELGLADRIHFLGHRRDVPLLMQAVDVMVHPSIDPEPFGRTLVEAML
CCHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
AGVPVIATDAGAAPDILEHGRAGLLVPPGDARALAEALDAVLSEPAILEPQLVYASRRAR
CCCCEEEECCCCCCHHHHCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
THYSLSRMLDSIGLLIRNVRAGAAV
HHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MMSRERVLFVDHTGQIGGAELILLDVVQGRNESSAFLFERGPLAQALAERGLSVITSRWG
CCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHC
LGLSTFRRDSSWMKALPLAGGLAAITAELARVARGHDVVYANSQKAFVLSAIANVVARKP
CCHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
LIWHLHDIISPVHFGAMQRRTQVFLANRVAAKVIVPSEAAAAAFIAAGGRRALVEIVPNG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHCCCCEEEEEECCCC
LSVEPVPVSRQELRQRLGLPSGPLVGVFSRLAQWKGQHVLVEALAQLPGVHGVIVGDALF
CCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEECHHH
GEQDYAAQLKRQVAELGLADRIHFLGHRRDVPLLMQAVDVMVHPSIDPEPFGRTLVEAML
CCHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
AGVPVIATDAGAAPDILEHGRAGLLVPPGDARALAEALDAVLSEPAILEPQLVYASRRAR
CCCCEEEECCCCCCHHHHCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
THYSLSRMLDSIGLLIRNVRAGAAV
HHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Hexosyltransferases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11157937; 11481430 [H]