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The map label for this gene is carQ [H]

Identifier: 146343596

GI number: 146343596

Start: 7094262

End: 7094873

Strand: Direct

Name: carQ [H]

Synonym: BRADO6834

Alternate gene names: 146343596

Gene position: 7094262-7094873 (Clockwise)

Preceding gene: 146343595

Following gene: 146343597

Centisome position: 95.14

GC content: 65.36

Gene sequence:

>612_bases
ATGCAGAACGTCGTTGCCATCAATTCCGCCGCCAGCCAGGGCATCATCGCGGCCCAGGCGACCACGGACGACATGCTCCT
CGAGAGCATTGCCGATGGCGATCGGACCGCGATGCACACGCTTTATGCGCGTCACAATGTGCGGGTCTATCGCTTCATCC
TGCGCATCGTCCGCGACACCACCGTCGCCGAGGACCTGGTCAGCCAGGTGTTCCTGGACGTGTGGCGCACCGCCAAGCAG
TTCGAAGGCCGCTCGCAGGTCTCGACCTGGCTGCTCTCGATCGCCCGCTTCAAGGCGCTGACCGCGCTGCGCCAGCGCCG
CTTCGAGGATATCGACCAGGACGAGGTGCGCGAGATCGCCGACGACAGCGACACGCCGGAGACCTCGCTCGAGCGCGCCA
CCACCAGCGCCATCCTGCGCGCCTGTGTCGCCAAGCTGTCGCCGGCCCATCGCGAAATCATCACCCTGATCTACTACCAT
GAGAAGTCAGTGGAGGAGGTCGGCCAGATCATCGGCATCCCGCAGAGCACGGTGAAGACCCGTATGTTCTACGCTCGCAA
GCACCTGGCCGAGCTCCTGCGCTGCGCCGGCGTCCACAGCCTCGCCGCGTAA

Upstream 100 bases:

>100_bases
AACCATTTTCCTGGTTTGGTGCAGACGTCCCGAAACGGGCACTCCGTAACAATCCCACCCGTCGAAACGCCGCAAGGGGG
CGGCGGAACGGGAGAGTGCC

Downstream 100 bases:

>100_bases
TCTCCATTCATCCCCGTCGGGGCCGACGTTCCGGCGGGTTCCAAAAAAAGACGACGCGCGAAAATCGCCGAATGAAACAA
TTGAAACAATCGGCGAAATC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MQNVVAINSAASQGIIAAQATTDDMLLESIADGDRTAMHTLYARHNVRVYRFILRIVRDTTVAEDLVSQVFLDVWRTAKQ
FEGRSQVSTWLLSIARFKALTALRQRRFEDIDQDEVREIADDSDTPETSLERATTSAILRACVAKLSPAHREIITLIYYH
EKSVEEVGQIIGIPQSTVKTRMFYARKHLAELLRCAGVHSLAA

Sequences:

>Translated_203_residues
MQNVVAINSAASQGIIAAQATTDDMLLESIADGDRTAMHTLYARHNVRVYRFILRIVRDTTVAEDLVSQVFLDVWRTAKQ
FEGRSQVSTWLLSIARFKALTALRQRRFEDIDQDEVREIADDSDTPETSLERATTSAILRACVAKLSPAHREIITLIYYH
EKSVEEVGQIIGIPQSTVKTRMFYARKHLAELLRCAGVHSLAA
>Mature_203_residues
MQNVVAINSAASQGIIAAQATTDDMLLESIADGDRTAMHTLYARHNVRVYRFILRIVRDTTVAEDLVSQVFLDVWRTAKQ
FEGRSQVSTWLLSIARFKALTALRQRRFEDIDQDEVREIADDSDTPETSLERATTSAILRACVAKLSPAHREIITLIYYH
EKSVEEVGQIIGIPQSTVKTRMFYARKHLAELLRCAGVHSLAA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes for the light induced biosynthesis of carotenoids [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 22859; Mature: 22859

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNVVAINSAASQGIIAAQATTDDMLLESIADGDRTAMHTLYARHNVRVYRFILRIVRDT
CCCEEEECCCCCCCEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHH
TVAEDLVSQVFLDVWRTAKQFEGRSQVSTWLLSIARFKALTALRQRRFEDIDQDEVREIA
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
DDSDTPETSLERATTSAILRACVAKLSPAHREIITLIYYHEKSVEEVGQIIGIPQSTVKT
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
RMFYARKHLAELLRCAGVHSLAA
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQNVVAINSAASQGIIAAQATTDDMLLESIADGDRTAMHTLYARHNVRVYRFILRIVRDT
CCCEEEECCCCCCCEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHH
TVAEDLVSQVFLDVWRTAKQFEGRSQVSTWLLSIARFKALTALRQRRFEDIDQDEVREIA
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
DDSDTPETSLERATTSAILRACVAKLSPAHREIITLIYYHEKSVEEVGQIIGIPQSTVKT
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
RMFYARKHLAELLRCAGVHSLAA
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934835; 8052622 [H]