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The map label for this gene is ydfH [H]

Identifier: 146343578

GI number: 146343578

Start: 7074482

End: 7075156

Strand: Reverse

Name: ydfH [H]

Synonym: BRADO6816

Alternate gene names: 146343578

Gene position: 7075156-7074482 (Counterclockwise)

Preceding gene: 146343579

Following gene: 146343577

Centisome position: 94.88

GC content: 67.85

Gene sequence:

>675_bases
ATGCCGCGCCCCGAGCGTGCGCCGCCTGCGGTGGCGAAGATCACGCGCGCAGAGGAGCTGCGCCTGCAACTCGCCGATGA
CATCGTGCGTGGCGCGCTGGCGCCGGGCGCACCGCTGGACGAAACCGAGATCGCGAAGCGCTTCAACGTGTCACGTACGC
CGGTGCGCGAGGCGCTGCGCCAGCTTGCGGCCTCCGGCTTGATCGAGGCACGCGCGCATCGCGGCGCCGTCGTCGCGCGC
CCCTCCGTCGATCGTCTCACGGGCATGTTCGAGGCCATGGCCGAGTTGGAAGGCCTGTGCGCGGGGCTTGCCGCGCAGCG
CATGACGCCGGTGGAGCGGCAGCGGCTCGAAGCCATTCATGAGGAGTTGCGCAACCTCAGCCATGCCGGCAATCCCGAGC
GCTTTCACGAGGTCAATGAGCGTTTCCACAATTCGATCTATGCGGGCGCGCATAACACCTATATCGCCGAGATCACCTTG
GCGACGCGGGTCCGGGTGCAGCCGTTCCGCCGCGCCCAGTTCCGCAACCTCGGCCGTCTCGCCAAGTCGCATGCCGAGCA
CGACCGCGTCGTCGTCGCCATCATGCGCGGCGACAAAGCAGGTGCTGCGAGCGCGATGAAAGCCCATATCGAGCTGGTCC
GCGGCGAGTACGAGATCTACGCGGTGTCGGTGTAG

Upstream 100 bases:

>100_bases
CGCCCATGTCAGCATCATCGACGAAGCAAAAGGCGGCTGAGGCATGAGCCTGGACGATCTTCCGCCGCGCACGCGCCAGC
GGATCGCTCGCGTTTCCGAG

Downstream 100 bases:

>100_bases
CATAGCTCGCAGTTTGAGCTGTAGGGTGGGCAAAGGCGCTGCCGTGCAGTTTCCGTGCACGGGATGTCTGTGGCGCCGTG
CCCACCGCCGTACTGATGAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MPRPERAPPAVAKITRAEELRLQLADDIVRGALAPGAPLDETEIAKRFNVSRTPVREALRQLAASGLIEARAHRGAVVAR
PSVDRLTGMFEAMAELEGLCAGLAAQRMTPVERQRLEAIHEELRNLSHAGNPERFHEVNERFHNSIYAGAHNTYIAEITL
ATRVRVQPFRRAQFRNLGRLAKSHAEHDRVVVAIMRGDKAGAASAMKAHIELVRGEYEIYAVSV

Sequences:

>Translated_224_residues
MPRPERAPPAVAKITRAEELRLQLADDIVRGALAPGAPLDETEIAKRFNVSRTPVREALRQLAASGLIEARAHRGAVVAR
PSVDRLTGMFEAMAELEGLCAGLAAQRMTPVERQRLEAIHEELRNLSHAGNPERFHEVNERFHNSIYAGAHNTYIAEITL
ATRVRVQPFRRAQFRNLGRLAKSHAEHDRVVVAIMRGDKAGAASAMKAHIELVRGEYEIYAVSV
>Mature_223_residues
PRPERAPPAVAKITRAEELRLQLADDIVRGALAPGAPLDETEIAKRFNVSRTPVREALRQLAASGLIEARAHRGAVVARP
SVDRLTGMFEAMAELEGLCAGLAAQRMTPVERQRLEAIHEELRNLSHAGNPERFHEVNERFHNSIYAGAHNTYIAEITLA
TRVRVQPFRRAQFRNLGRLAKSHAEHDRVVVAIMRGDKAGAASAMKAHIELVRGEYEIYAVSV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=192, Percent_Identity=31.25, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI48994955, Length=213, Percent_Identity=26.7605633802817, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082149, Length=196, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87081914, Length=220, Percent_Identity=26.3636363636364, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24817; Mature: 24686

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRPERAPPAVAKITRAEELRLQLADDIVRGALAPGAPLDETEIAKRFNVSRTPVREALR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHH
QLAASGLIEARAHRGAVVARPSVDRLTGMFEAMAELEGLCAGLAAQRMTPVERQRLEAIH
HHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
EELRNLSHAGNPERFHEVNERFHNSIYAGAHNTYIAEITLATRVRVQPFRRAQFRNLGRL
HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHCHHHHHHHHHHHHH
AKSHAEHDRVVVAIMRGDKAGAASAMKAHIELVRGEYEIYAVSV
HHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEC
>Mature Secondary Structure 
PRPERAPPAVAKITRAEELRLQLADDIVRGALAPGAPLDETEIAKRFNVSRTPVREALR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHH
QLAASGLIEARAHRGAVVARPSVDRLTGMFEAMAELEGLCAGLAAQRMTPVERQRLEAIH
HHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
EELRNLSHAGNPERFHEVNERFHNSIYAGAHNTYIAEITLATRVRVQPFRRAQFRNLGRL
HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHCHHHHHHHHHHHHH
AKSHAEHDRVVVAIMRGDKAGAASAMKAHIELVRGEYEIYAVSV
HHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]