| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is speB2 [H]
Identifier: 146343558
GI number: 146343558
Start: 7054487
End: 7055692
Strand: Reverse
Name: speB2 [H]
Synonym: BRADO6795
Alternate gene names: 146343558
Gene position: 7055692-7054487 (Counterclockwise)
Preceding gene: 146343559
Following gene: 146343557
Centisome position: 94.62
GC content: 66.5
Gene sequence:
>1206_bases ATGTCATTCCCAGCCATGCGGCGCAGCCGCCGTGCCGGATTGCAGCCGCAGCGCTCGCGCCTGCGCCGGCATCATCCGGA CTTTGACAAGATGGCGACGCAAGGCTGGCAGGCGCTGGAGGCCGAGGGCAAGCTGCCGAGCAACGGCTGGCGCAAGGAGC GGCAATGGGCGCTCGACATGGGCCTGCCCGGCTCGGACAGCCTGACCGATCGCGACATCCCGACCTTCGCGCGCGGTGAG CTGCCGCATTTCGCTGGGATCAACACCTTCATGAAGGCGCCCTATGTCGAGAACGTCCGCGACGTCGGCAAATACGACGC CGCCGTGATCGGCATCCCGTTCGATTCCGGCACCACCTATCGTCCCGGCACGCGCTTCGGGCCGCAGGGCATCCGCCGCA TCTCCGCGCTCTACACGCCCTACAATTACGAGCTCGGCGTCGACCTGCGCGAGCAGATGACTTTGTGCGATGCCGGTGAC GTCTTCACCATCCCGGCGAACCTCGAAAAGAGCTTCGACCAGATCAGCCGCGGCGTCGCGCATGTGTTCTCGTCTGGCGC GCTGCCGATCATGCTCGGCGGCGACCACTCGATCGGCTTCCCCTGCGTGCGCGGCATCGCGCAGTGCACCGACAAGAGGA TCGGCATCATCCATTTCGACCGCCACATCGACATCCAGGAGAAGGATCTCGACGAGCGCATGCACACCACGCCCTGGTAC TGGGCAACCAATCTGCCGAACGTCTCGCCGACCAATCTGGTCCAGCTCGGCATCGGCGGCTGGCAGGTGCCGCGCGAGGG CGTCGAGGTCGCGCGCAAGCGCAACACCAACGTGCTGACCATCGCCGACATCGAGAAGATCGGCCTGGAGAAGACCGCCG AGATCGCGCTGGAGCTGGCCTGGAAGGATGCCGACGCCGTCTACATCTCGTTCGACGTCGATTCCATCGATTGCGGCTTC GTGCCCGGCACCGGCTGGCCGGAGCCCGGCGGCTTCCTGCCGCGCGAGGCGCTGAAGCTGCTCGGCCTCGTCGCCGCCGA GGGCCTCTGCGGCCTCGAAGTGGTCGAGGTCTCGCCGCCCTACGATACGTCCGACATCACCGCGCTGATCGGCGTGCGCG TCGTCGTCGAGGCGCTGGGCTCGATGGTCGCCCACGGCAAGCTCGGCAGCCACAAGCACATCATCAACAAGCCGGTCAGC TTCTGA
Upstream 100 bases:
>100_bases CCTCGATCTCACCCGCGACAGTCCTGTGCCCGTGCTCGGCTTCATCCGCGCCAGCGTGCAGGCGGCGCAATAACACTCAG AAGAAACGAAGGAGAACTCC
Downstream 100 bases:
>100_bases GGTCCGCGATGCGCCATCATCACCACTATCACGGCCATCATCATGATCATGGTCATTCTCACGATCATGATCATCACCAT GATCACGATCATCCGCCGCA
Product: putative agmatine ureohydrolase
Products: NA
Alternate protein names: Agmatine ureohydrolase 2; AUH 2 [H]
Number of amino acids: Translated: 401; Mature: 400
Protein sequence:
>401_residues MSFPAMRRSRRAGLQPQRSRLRRHHPDFDKMATQGWQALEAEGKLPSNGWRKERQWALDMGLPGSDSLTDRDIPTFARGE LPHFAGINTFMKAPYVENVRDVGKYDAAVIGIPFDSGTTYRPGTRFGPQGIRRISALYTPYNYELGVDLREQMTLCDAGD VFTIPANLEKSFDQISRGVAHVFSSGALPIMLGGDHSIGFPCVRGIAQCTDKRIGIIHFDRHIDIQEKDLDERMHTTPWY WATNLPNVSPTNLVQLGIGGWQVPREGVEVARKRNTNVLTIADIEKIGLEKTAEIALELAWKDADAVYISFDVDSIDCGF VPGTGWPEPGGFLPREALKLLGLVAAEGLCGLEVVEVSPPYDTSDITALIGVRVVVEALGSMVAHGKLGSHKHIINKPVS F
Sequences:
>Translated_401_residues MSFPAMRRSRRAGLQPQRSRLRRHHPDFDKMATQGWQALEAEGKLPSNGWRKERQWALDMGLPGSDSLTDRDIPTFARGE LPHFAGINTFMKAPYVENVRDVGKYDAAVIGIPFDSGTTYRPGTRFGPQGIRRISALYTPYNYELGVDLREQMTLCDAGD VFTIPANLEKSFDQISRGVAHVFSSGALPIMLGGDHSIGFPCVRGIAQCTDKRIGIIHFDRHIDIQEKDLDERMHTTPWY WATNLPNVSPTNLVQLGIGGWQVPREGVEVARKRNTNVLTIADIEKIGLEKTAEIALELAWKDADAVYISFDVDSIDCGF VPGTGWPEPGGFLPREALKLLGLVAAEGLCGLEVVEVSPPYDTSDITALIGVRVVVEALGSMVAHGKLGSHKHIINKPVS F >Mature_400_residues SFPAMRRSRRAGLQPQRSRLRRHHPDFDKMATQGWQALEAEGKLPSNGWRKERQWALDMGLPGSDSLTDRDIPTFARGEL PHFAGINTFMKAPYVENVRDVGKYDAAVIGIPFDSGTTYRPGTRFGPQGIRRISALYTPYNYELGVDLREQMTLCDAGDV FTIPANLEKSFDQISRGVAHVFSSGALPIMLGGDHSIGFPCVRGIAQCTDKRIGIIHFDRHIDIQEKDLDERMHTTPWYW ATNLPNVSPTNLVQLGIGGWQVPREGVEVARKRNTNVLTIADIEKIGLEKTAEIALELAWKDADAVYISFDVDSIDCGFV PGTGWPEPGGFLPREALKLLGLVAAEGLCGLEVVEVSPPYDTSDITALIGVRVVVEALGSMVAHGKLGSHKHIINKPVSF
Specific function: Catalyzes The Formation Of Putrescine From Agmatine. [C]
COG id: COG0010
COG function: function code E; Arginase/agmatinase/formimionoglutamate hydrolase, arginase family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the arginase family. Agmatinase subfamily [H]
Homologues:
Organism=Homo sapiens, GI37537722, Length=299, Percent_Identity=31.7725752508361, Blast_Score=158, Evalue=8e-39, Organism=Homo sapiens, GI10947139, Length=319, Percent_Identity=25.705329153605, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI4502215, Length=326, Percent_Identity=24.2331288343558, Blast_Score=84, Evalue=2e-16, Organism=Escherichia coli, GI1789306, Length=267, Percent_Identity=29.2134831460674, Blast_Score=117, Evalue=9e-28, Organism=Saccharomyces cerevisiae, GI6325146, Length=215, Percent_Identity=26.046511627907, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006035 - InterPro: IPR020855 [H]
Pfam domain/function: PF00491 Arginase [H]
EC number: =3.5.3.11 [H]
Molecular weight: Translated: 44229; Mature: 44098
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFPAMRRSRRAGLQPQRSRLRRHHPDFDKMATQGWQALEAEGKLPSNGWRKERQWALDM CCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHCCHHHHCCCCCCCCCCCHHHHEEEEC GLPGSDSLTDRDIPTFARGELPHFAGINTFMKAPYVENVRDVGKYDAAVIGIPFDSGTTY CCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHCCHHHHHHHHCCCCEEEEEEECCCCCCC RPGTRFGPQGIRRISALYTPYNYELGVDLREQMTLCDAGDVFTIPANLEKSFDQISRGVA CCCCCCCHHHHHHHHHHCCCCCEEECCCHHHHHHEECCCCEEEECCHHHHHHHHHHHHHH HVFSSGALPIMLGGDHSIGFPCVRGIAQCTDKRIGIIHFDRHIDIQEKDLDERMHTTPWY HHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCCE WATNLPNVSPTNLVQLGIGGWQVPREGVEVARKRNTNVLTIADIEKIGLEKTAEIALELA EECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEEECHHHHCCHHHHHEEEEEE WKDADAVYISFDVDSIDCGFVPGTGWPEPGGFLPREALKLLGLVAAEGLCGLEVVEVSPP ECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC YDTSDITALIGVRVVVEALGSMVAHGKLGSHKHIINKPVSF CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCC >Mature Secondary Structure SFPAMRRSRRAGLQPQRSRLRRHHPDFDKMATQGWQALEAEGKLPSNGWRKERQWALDM CCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHCCHHHHCCCCCCCCCCCHHHHEEEEC GLPGSDSLTDRDIPTFARGELPHFAGINTFMKAPYVENVRDVGKYDAAVIGIPFDSGTTY CCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHCCHHHHHHHHCCCCEEEEEEECCCCCCC RPGTRFGPQGIRRISALYTPYNYELGVDLREQMTLCDAGDVFTIPANLEKSFDQISRGVA CCCCCCCHHHHHHHHHHCCCCCEEECCCHHHHHHEECCCCEEEECCHHHHHHHHHHHHHH HVFSSGALPIMLGGDHSIGFPCVRGIAQCTDKRIGIIHFDRHIDIQEKDLDERMHTTPWY HHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCCE WATNLPNVSPTNLVQLGIGGWQVPREGVEVARKRNTNVLTIADIEKIGLEKTAEIALELA EECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEEECHHHHCCHHHHHEEEEEE WKDADAVYISFDVDSIDCGFVPGTGWPEPGGFLPREALKLLGLVAAEGLCGLEVVEVSPP ECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC YDTSDITALIGVRVVVEALGSMVAHGKLGSHKHIINKPVSF CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]