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The map label for this gene is yhjC [H]

Identifier: 146343235

GI number: 146343235

Start: 6707813

End: 6708730

Strand: Reverse

Name: yhjC [H]

Synonym: BRADO6454

Alternate gene names: 146343235

Gene position: 6708730-6707813 (Counterclockwise)

Preceding gene: 146343237

Following gene: 146343233

Centisome position: 89.97

GC content: 68.95

Gene sequence:

>918_bases
ATGGAAGGTCTCTTGGACCGCCTGGATGCCATGGAAGTGGTGCTGGCCGCGGCGGACGCCGGCAGCCTGTCGAAAGCCAG
CCGGGCGCTCGGGCTGCCCCTCGCCACCGTCAGCCGCAAGGTCGCCGAGCTCGAAGCGCACCTGAAGGCGACGCTGCTTA
TCCGCTCGGCCAAGGGGCTGGAGCTGACGCCGGCGGGCCGATCTTATGTCGCGGCCGCACGCGCGATCCTGGAGCAGGTC
GCCGAGGCCGAGCGCGCCGCGTCCGGCGAATATTCCGAGCCCAAGGGCGACCTCGTGGTGACCGCGCCGATCATGTTCGG
CCGGCTGCATGCGCTGCCGGTGGTGACGCGCTTTCTCGGCGCCTATCCGGATGTGGCGGTGGATCTCGTGATGACCGACC
GCGTCGCGCATTTTCTCGACGACCAGGTCGACGTCGCACTGCGCATCGGTCAACTGCCGGACTCGCGCCTGATCGCCACC
CGGCTCGGCACGGTCCGCCACGTCGTCTGCGCCAGCCCCGACTATCTCGCGGCCAATGGCTGCCTCGCGGCGCCGGATGA
TCTGGCGCGGCACAGCGTGGTCTCGTTCCAGAGCGTGTCGACGGAGAGCGCCTGGCCGTTCGAGCGTGGCGGCTCCGAGA
TCACCGCCGGCTTTCGCGCGCGTCTCGGCGTCAACACCATCGATGCCGCAATCGACGCAGGGTTGTCAGGCGCAGGACTG
GTGCGGGCGCTGTCCTATCAGGTGGTCGACCACGTCCGCAGCGGCCGTCTTCAGCTGGTTCTCGAGACCTTCGAGCCGGA
GCCGCGACCCGTGCACCTCGTTTATGACGGTCAGACCCGGCTGCCGCTTAAGCTGCGCGCTTTCGTCGACTTCGCCGTGC
CGCTGCTGCGGCAGCGGCTGGTGGAGGCGGCAATTTGA

Upstream 100 bases:

>100_bases
TCTCGGGCGGACGCAACGATCGCCGGCCGCCGGTCCCCGGTTTCTATGCCTTCCAAAAAGAAGCGGGAGCCGGTAGGTTC
GGAAAGAAGCCTCTCGTTTT

Downstream 100 bases:

>100_bases
GCCCGGAGTGCGCCACTAACACCGCCGTCGTCCCTGCGAATGCCTGCGTTCGCACGGACGAAAGCGGGTGGCGAGGCGTC
GATGGCCAGCGAAGGACGGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MEGLLDRLDAMEVVLAAADAGSLSKASRALGLPLATVSRKVAELEAHLKATLLIRSAKGLELTPAGRSYVAAARAILEQV
AEAERAASGEYSEPKGDLVVTAPIMFGRLHALPVVTRFLGAYPDVAVDLVMTDRVAHFLDDQVDVALRIGQLPDSRLIAT
RLGTVRHVVCASPDYLAANGCLAAPDDLARHSVVSFQSVSTESAWPFERGGSEITAGFRARLGVNTIDAAIDAGLSGAGL
VRALSYQVVDHVRSGRLQLVLETFEPEPRPVHLVYDGQTRLPLKLRAFVDFAVPLLRQRLVEAAI

Sequences:

>Translated_305_residues
MEGLLDRLDAMEVVLAAADAGSLSKASRALGLPLATVSRKVAELEAHLKATLLIRSAKGLELTPAGRSYVAAARAILEQV
AEAERAASGEYSEPKGDLVVTAPIMFGRLHALPVVTRFLGAYPDVAVDLVMTDRVAHFLDDQVDVALRIGQLPDSRLIAT
RLGTVRHVVCASPDYLAANGCLAAPDDLARHSVVSFQSVSTESAWPFERGGSEITAGFRARLGVNTIDAAIDAGLSGAGL
VRALSYQVVDHVRSGRLQLVLETFEPEPRPVHLVYDGQTRLPLKLRAFVDFAVPLLRQRLVEAAI
>Mature_305_residues
MEGLLDRLDAMEVVLAAADAGSLSKASRALGLPLATVSRKVAELEAHLKATLLIRSAKGLELTPAGRSYVAAARAILEQV
AEAERAASGEYSEPKGDLVVTAPIMFGRLHALPVVTRFLGAYPDVAVDLVMTDRVAHFLDDQVDVALRIGQLPDSRLIAT
RLGTVRHVVCASPDYLAANGCLAAPDDLARHSVVSFQSVSTESAWPFERGGSEITAGFRARLGVNTIDAAIDAGLSGAGL
VRALSYQVVDHVRSGRLQLVLETFEPEPRPVHLVYDGQTRLPLKLRAFVDFAVPLLRQRLVEAAI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=298, Percent_Identity=29.5302013422819, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1789639, Length=289, Percent_Identity=29.0657439446367, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI1786401, Length=286, Percent_Identity=29.3706293706294, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=27.7397260273973, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787128, Length=279, Percent_Identity=26.5232974910394, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787589, Length=270, Percent_Identity=25.9259259259259, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI87081978, Length=299, Percent_Identity=26.0869565217391, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789173, Length=268, Percent_Identity=27.2388059701493, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32600; Mature: 32600

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGLLDRLDAMEVVLAAADAGSLSKASRALGLPLATVSRKVAELEAHLKATLLIRSAKGL
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEECCCCC
ELTPAGRSYVAAARAILEQVAEAERAASGEYSEPKGDLVVTAPIMFGRLHALPVVTRFLG
EECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHC
AYPDVAVDLVMTDRVAHFLDDQVDVALRIGQLPDSRLIATRLGTVRHVVCASPDYLAANG
CCCCHHHHHHHHHHHHHHHCCHHEEHHEECCCCCCHHHHHHHHHHHHHEECCCCCEECCC
CLAAPDDLARHSVVSFQSVSTESAWPFERGGSEITAGFRARLGVNTIDAAIDAGLSGAGL
CCCCCHHHHHHHHHHHHHCCCCCCCCHHCCCCCEEHHHHHHCCCCHHHHHHHCCCCCHHH
VRALSYQVVDHVRSGRLQLVLETFEPEPRPVHLVYDGQTRLPLKLRAFVDFAVPLLRQRL
HHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
VEAAI
HHHCC
>Mature Secondary Structure
MEGLLDRLDAMEVVLAAADAGSLSKASRALGLPLATVSRKVAELEAHLKATLLIRSAKGL
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEECCCCC
ELTPAGRSYVAAARAILEQVAEAERAASGEYSEPKGDLVVTAPIMFGRLHALPVVTRFLG
EECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHC
AYPDVAVDLVMTDRVAHFLDDQVDVALRIGQLPDSRLIATRLGTVRHVVCASPDYLAANG
CCCCHHHHHHHHHHHHHHHCCHHEEHHEECCCCCCHHHHHHHHHHHHHEECCCCCEECCC
CLAAPDDLARHSVVSFQSVSTESAWPFERGGSEITAGFRARLGVNTIDAAIDAGLSGAGL
CCCCCHHHHHHHHHHHHHCCCCCCCCHHCCCCCEEHHHHHHCCCCHHHHHHHCCCCCHHH
VRALSYQVVDHVRSGRLQLVLETFEPEPRPVHLVYDGQTRLPLKLRAFVDFAVPLLRQRL
HHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
VEAAI
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]