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The map label for this gene is virD4 [H]

Identifier: 146343173

GI number: 146343173

Start: 6633769

End: 6635385

Strand: Direct

Name: virD4 [H]

Synonym: BRADO6373

Alternate gene names: 146343173

Gene position: 6633769-6635385 (Clockwise)

Preceding gene: 146343172

Following gene: 146343174

Centisome position: 88.97

GC content: 58.01

Gene sequence:

>1617_bases
ATGAGTAGTTTCGATCCCTTCGGGGACATGAAGCGAGCGTGGAGCGTCTTTTCGAGCACGCAAAAAGCGGTCAACAAGGC
CATCAACGCTCATCATCAGCGTCAACAGCGTAGGGAAGCGGAAGAGCATCATCGACGGCAGCGCGAAGAGCAGGAAGAAC
TGCTGCGCAATCCACCACCGTTACACGGATCCGCAGCTTGGGCCTCACCGAGTGAGCTTACGAAGTTCCTGAAAGGACGA
GAGGCATTCGACAATCCATCATCGATCTTGCTGGGTGCTATGAAGGACGAGACTGGCGTGGTGCGTTTCGTACACTGGGA
CGACGCAGGCCATCTCCTCACGGTCGCGCCTACCCGCTCGGGTAAAGCGGTAACGACGCTCATTCCAAACCTGCTGCGAT
ACAAGGGCAGCGTCGTTGTCATAGACCCCAAGTCGGAGCTCTACGAGCAGACATCCGCATGGCGGGCGGCGAACGTCGGA
CCGGTTTACCGGATCGCTCCGTTCGACAGGGGCGACAATCCGAAAACAGCCAATTTCCCGCAGCATGGTTTCAATCCGCT
GACCCGTATCCGGACACAAGCGGACGCGAGAGCGCTGGCGCAACTGATGTTCCCACGCGATGCGAACGCAGCGGAGTTCT
TTATTGAGGACGCAGTGGCCTTCCTGACTGCACTCATCATGTACGTGCTGGACGAAGCGCCACCTGAACGCCGCACGCTT
GCGGCAGTAATCCAGGCCTGCAACCTGCCGATCGGTCAATTCAAGCATCTGGCCGAGCGCATGGCCAATTCCAAGCGCAG
CAGCATTGCCGCCGCTGCAACCAATGTGCTTGGCAAGTCCGAGGATCGGGGGCTGCCGAACATCCGCGATACGCTGCATA
GCAAGCTTTCGCTGTGGGATGACGAAGAGCTTCTTGCCTGCCTGAAATTGCACGACTTCAATTTTGAGGACCTGAAGGAC
AGTCCAGCGACGGTTTACCTGGATGTACCGTTTGACCTCATTGGTCCCTACTCACCATGGTTGCGCGTCGTCCTCAAGTC
GGCGCTGGATGCCATGCTCCGCAACACGCGGACCCCAGACATTCCAGTGCTGTTCGCGCTCGACGAATTTCTGCAGCTCG
GGCCTTTTCCAGAATTCCGGGACGCAATCCGTACCCACGCAGGGGCAGGCGTACGGCTCTGGTTCTTCCTGCAGGACGTT
GCCTCGCTTGAGGAACACTACCCAAGGAATAGCTGGCGGCCGTTCTTGAACACCTCGATCAAGCAATTCTTCGGCATCGA
CGACCCGTTTACGGCTGAACTCGTCGGGAAATATCTTGGCACCACGACAGTAGCCTACCGATCGACCAATGCCGGCAACA
ATACCTCTGCCGGTCGCGGCAGCTACTTTGAAAACGATGGCAACACGAGCTACTCTTCAGGCGAGTCCGTGCAATTTGTC
GGGCGCCCTTTGCTGACGCCGGACGAAGTCATGGCGCTGCTGTCTGACTGGAGCGGGAAGGGTGAGCGCATCGGGATTGT
CCATGCGCGTGGGCCTCGCCCGTTCAAGGTTCATCTCACCGCATTCGATAAGAGCGAGACATGCCGGGCACGAACCGGGG
CATTCCTCAATAAATAG

Upstream 100 bases:

>100_bases
CAAGTGTGTAGTCCAAGATTTTTGCGTGGCTCATACCTTCAAAGCGATTGTTTTCGAACGATTCCACCTCTAGTTTATTG
GCTTTCAGCGGGGGCATTTC

Downstream 100 bases:

>100_bases
GATCGAACCATGCGTTTCGAATATTTTTTTCCCAATGATTGGGCGACGTTGGCCAAGCGCTATCTCGTGGTCAGCGCCAT
CCGTTACATTTGGATTTTGT

Product: putative VirD4/TraG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 538; Mature: 537

Protein sequence:

>538_residues
MSSFDPFGDMKRAWSVFSSTQKAVNKAINAHHQRQQRREAEEHHRRQREEQEELLRNPPPLHGSAAWASPSELTKFLKGR
EAFDNPSSILLGAMKDETGVVRFVHWDDAGHLLTVAPTRSGKAVTTLIPNLLRYKGSVVVIDPKSELYEQTSAWRAANVG
PVYRIAPFDRGDNPKTANFPQHGFNPLTRIRTQADARALAQLMFPRDANAAEFFIEDAVAFLTALIMYVLDEAPPERRTL
AAVIQACNLPIGQFKHLAERMANSKRSSIAAAATNVLGKSEDRGLPNIRDTLHSKLSLWDDEELLACLKLHDFNFEDLKD
SPATVYLDVPFDLIGPYSPWLRVVLKSALDAMLRNTRTPDIPVLFALDEFLQLGPFPEFRDAIRTHAGAGVRLWFFLQDV
ASLEEHYPRNSWRPFLNTSIKQFFGIDDPFTAELVGKYLGTTTVAYRSTNAGNNTSAGRGSYFENDGNTSYSSGESVQFV
GRPLLTPDEVMALLSDWSGKGERIGIVHARGPRPFKVHLTAFDKSETCRARTGAFLNK

Sequences:

>Translated_538_residues
MSSFDPFGDMKRAWSVFSSTQKAVNKAINAHHQRQQRREAEEHHRRQREEQEELLRNPPPLHGSAAWASPSELTKFLKGR
EAFDNPSSILLGAMKDETGVVRFVHWDDAGHLLTVAPTRSGKAVTTLIPNLLRYKGSVVVIDPKSELYEQTSAWRAANVG
PVYRIAPFDRGDNPKTANFPQHGFNPLTRIRTQADARALAQLMFPRDANAAEFFIEDAVAFLTALIMYVLDEAPPERRTL
AAVIQACNLPIGQFKHLAERMANSKRSSIAAAATNVLGKSEDRGLPNIRDTLHSKLSLWDDEELLACLKLHDFNFEDLKD
SPATVYLDVPFDLIGPYSPWLRVVLKSALDAMLRNTRTPDIPVLFALDEFLQLGPFPEFRDAIRTHAGAGVRLWFFLQDV
ASLEEHYPRNSWRPFLNTSIKQFFGIDDPFTAELVGKYLGTTTVAYRSTNAGNNTSAGRGSYFENDGNTSYSSGESVQFV
GRPLLTPDEVMALLSDWSGKGERIGIVHARGPRPFKVHLTAFDKSETCRARTGAFLNK
>Mature_537_residues
SSFDPFGDMKRAWSVFSSTQKAVNKAINAHHQRQQRREAEEHHRRQREEQEELLRNPPPLHGSAAWASPSELTKFLKGRE
AFDNPSSILLGAMKDETGVVRFVHWDDAGHLLTVAPTRSGKAVTTLIPNLLRYKGSVVVIDPKSELYEQTSAWRAANVGP
VYRIAPFDRGDNPKTANFPQHGFNPLTRIRTQADARALAQLMFPRDANAAEFFIEDAVAFLTALIMYVLDEAPPERRTLA
AVIQACNLPIGQFKHLAERMANSKRSSIAAAATNVLGKSEDRGLPNIRDTLHSKLSLWDDEELLACLKLHDFNFEDLKDS
PATVYLDVPFDLIGPYSPWLRVVLKSALDAMLRNTRTPDIPVLFALDEFLQLGPFPEFRDAIRTHAGAGVRLWFFLQDVA
SLEEHYPRNSWRPFLNTSIKQFFGIDDPFTAELVGKYLGTTTVAYRSTNAGNNTSAGRGSYFENDGNTSYSSGESVQFVG
RPLLTPDEVMALLSDWSGKGERIGIVHARGPRPFKVHLTAFDKSETCRARTGAFLNK

Specific function: Unknown

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virD4/traG family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003688 [H]

Pfam domain/function: PF02534 TraG [H]

EC number: NA

Molecular weight: Translated: 60168; Mature: 60036

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSFDPFGDMKRAWSVFSSTQKAVNKAINAHHQRQQRREAEEHHRRQREEQEELLRNPPP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LHGSAAWASPSELTKFLKGREAFDNPSSILLGAMKDETGVVRFVHWDDAGHLLTVAPTRS
CCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEECCCC
GKAVTTLIPNLLRYKGSVVVIDPKSELYEQTSAWRAANVGPVYRIAPFDRGDNPKTANFP
CCHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCC
QHGFNPLTRIRTQADARALAQLMFPRDANAAEFFIEDAVAFLTALIMYVLDEAPPERRTL
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
AAVIQACNLPIGQFKHLAERMANSKRSSIAAAATNVLGKSEDRGLPNIRDTLHSKLSLWD
HHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC
DEELLACLKLHDFNFEDLKDSPATVYLDVPFDLIGPYSPWLRVVLKSALDAMLRNTRTPD
HHHHHHHHHHCCCCHHHCCCCCCEEEEECCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCC
IPVLFALDEFLQLGPFPEFRDAIRTHAGAGVRLWFFLQDVASLEEHYPRNSWRPFLNTSI
CEEHHHHHHHHHCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHCCCCCCCHHHHHHH
KQFFGIDDPFTAELVGKYLGTTTVAYRSTNAGNNTSAGRGSYFENDGNTSYSSGESVQFV
HHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
GRPLLTPDEVMALLSDWSGKGERIGIVHARGPRPFKVHLTAFDKSETCRARTGAFLNK
CCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEEEECCCCHHHHHHCHHCCC
>Mature Secondary Structure 
SSFDPFGDMKRAWSVFSSTQKAVNKAINAHHQRQQRREAEEHHRRQREEQEELLRNPPP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LHGSAAWASPSELTKFLKGREAFDNPSSILLGAMKDETGVVRFVHWDDAGHLLTVAPTRS
CCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEECCCC
GKAVTTLIPNLLRYKGSVVVIDPKSELYEQTSAWRAANVGPVYRIAPFDRGDNPKTANFP
CCHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCC
QHGFNPLTRIRTQADARALAQLMFPRDANAAEFFIEDAVAFLTALIMYVLDEAPPERRTL
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
AAVIQACNLPIGQFKHLAERMANSKRSSIAAAATNVLGKSEDRGLPNIRDTLHSKLSLWD
HHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC
DEELLACLKLHDFNFEDLKDSPATVYLDVPFDLIGPYSPWLRVVLKSALDAMLRNTRTPD
HHHHHHHHHHCCCCHHHCCCCCCEEEEECCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCC
IPVLFALDEFLQLGPFPEFRDAIRTHAGAGVRLWFFLQDVASLEEHYPRNSWRPFLNTSI
CEEHHHHHHHHHCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHCCCCCCCHHHHHHH
KQFFGIDDPFTAELVGKYLGTTTVAYRSTNAGNNTSAGRGSYFENDGNTSYSSGESVQFV
HHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
GRPLLTPDEVMALLSDWSGKGERIGIVHARGPRPFKVHLTAFDKSETCRARTGAFLNK
CCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEEEECCCCHHHHHHCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3185501 [H]