Click here to switch to the map view.

The map label for this gene is oprB [H]

Identifier: 146343159

GI number: 146343159

Start: 6615102

End: 6616460

Strand: Reverse

Name: oprB [H]

Synonym: BRADO6357

Alternate gene names: 146343159

Gene position: 6616460-6615102 (Counterclockwise)

Preceding gene: 146343160

Following gene: 146343157

Centisome position: 88.73

GC content: 66.45

Gene sequence:

>1359_bases
GTGATAATTCGAGCGTCGATGGCAGGGCGGATCTCTTCGGCCGCGCTTGCGCTTCTGATCACGATGACGCTGTCCTCGGA
AACACGCGCCGACGATCGCGCCGCGGCGGGCGGGCAGACGGAGGTTCAAAAGCAGCTCGCCGACTGGGGCATCCAGTTCA
ACCTGACCTATATCGGCGAGACCTTCGCCAACCCGGTCGGCGGTGTCCGCAACGGCGCCATCTACACGGGGCGCCTCGAT
GTCGGTACGACGATCGACCTCGAGAAGCTGGTCGGGTGGAGCGGAGCGACCTTCCACGCCAACGCTTACCAGATCCATGG
CGACGGGCTGTCGCGCAGCTATGTCGGCAATCTGATGCTGGTCAGCGGCGTCGAGGCTTTGCCCGCCAGCCGGCTCTACG
AGTTCTGGGTCGAGCAGGCGCTGCTTGGCGGCAAGCTTCTGGTCCGTGTCGGCCAGCAGCCGTCCGACGTCGAGTTCATC
GACAGCAAATATGACGATCTGTTCGCCAATTCCGCGCTGGGATGGCCGGGCATCACCGGCATCATCCTCCCGAGCGGGGG
ACCATCGCCGCCGCTCGCGGTGCCTGGCATCCGGCTGAAGGCGCAGTTCACCGATCAGCTCGTCGGCTATCTCGCCGTGT
TCGACGGCGACGCCGCGCCCCCAGGGCCGGGCGATCCCCAGCTCAAGAACCCGCATGGCATCCTGTTCCGCGTGCAGGAC
CCGCCCTGGGTGATCGGGCAGCTCCGATACGGCTTCGACCTGGGCTCGACGGCCTTGCCCGGCACGATCGCCGCCGGCGC
CTGGTATCATTTCGGCTCATTCGACAACCAGCGCTTCGACAGCGACGGACGCGCACTGGCCGATCCGCTCAGCTCCGGGC
AGCCGGCACGCATGCGCCGCAACCAGGGTGTGTTCGCGGTGTTCGAGCAGCTGCTGATGCGCAGCCCGTTGGATGCCGCC
AAGGGGGCGGGCCTGTTCGTCAGGACCTCCGTCAGCCCGTCGGATCGCAACCTCATCAGCTTCTATCTCGACGGCGGCAT
CCAGTTCACCGGCTTCAGCGCGGCGCGTCCCGACGACAAGTTCGGCATCGCCGCCACCTATGCAAGGATCTCGCGCGATG
TCCGCCGCTACGACCAGGATCTGCAGCTGTTCACCGGGATCGCGACGCCGGTGCGTGATTTCGAGGCCATCTTCGAGGCG
AGCTACTCGTTCCAGGTCACGCCGAACGTCGCCGTGCAGCCGATCGTCGAATATGTCATCCATCCCGGTGGCGGCGCCGT
CGACCCCAACGATCCGACCCAGACCCGCCGCATCCGCGACGCCATCGTCTTCGGCGTCCGCACCACCGCCGCGTTCTGA

Upstream 100 bases:

>100_bases
GAGGACGGTTTCCTTTGGGCCGCTCTGCTGATGGTGTTGACGGCCGGCGGCGCGTTCCTGCTGATGAAGCGCATTGGCCT
GATCAGATAGCGAGTGTTGC

Downstream 100 bases:

>100_bases
GAGGGGCAAGCCTCAAGAGGCCGCGTAGAGTCGAGCGTGCGGACGCATCAAATATGCCGCTGAGAGTAGGCGCACCTGAT
CTCCGCTTGCCACCCAGCCA

Product: carbohydrate porin, OprB family

Products: NA

Alternate protein names: Glucose porin; Outer membrane protein D1 [H]

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MIIRASMAGRISSAALALLITMTLSSETRADDRAAAGGQTEVQKQLADWGIQFNLTYIGETFANPVGGVRNGAIYTGRLD
VGTTIDLEKLVGWSGATFHANAYQIHGDGLSRSYVGNLMLVSGVEALPASRLYEFWVEQALLGGKLLVRVGQQPSDVEFI
DSKYDDLFANSALGWPGITGIILPSGGPSPPLAVPGIRLKAQFTDQLVGYLAVFDGDAAPPGPGDPQLKNPHGILFRVQD
PPWVIGQLRYGFDLGSTALPGTIAAGAWYHFGSFDNQRFDSDGRALADPLSSGQPARMRRNQGVFAVFEQLLMRSPLDAA
KGAGLFVRTSVSPSDRNLISFYLDGGIQFTGFSAARPDDKFGIAATYARISRDVRRYDQDLQLFTGIATPVRDFEAIFEA
SYSFQVTPNVAVQPIVEYVIHPGGGAVDPNDPTQTRRIRDAIVFGVRTTAAF

Sequences:

>Translated_452_residues
MIIRASMAGRISSAALALLITMTLSSETRADDRAAAGGQTEVQKQLADWGIQFNLTYIGETFANPVGGVRNGAIYTGRLD
VGTTIDLEKLVGWSGATFHANAYQIHGDGLSRSYVGNLMLVSGVEALPASRLYEFWVEQALLGGKLLVRVGQQPSDVEFI
DSKYDDLFANSALGWPGITGIILPSGGPSPPLAVPGIRLKAQFTDQLVGYLAVFDGDAAPPGPGDPQLKNPHGILFRVQD
PPWVIGQLRYGFDLGSTALPGTIAAGAWYHFGSFDNQRFDSDGRALADPLSSGQPARMRRNQGVFAVFEQLLMRSPLDAA
KGAGLFVRTSVSPSDRNLISFYLDGGIQFTGFSAARPDDKFGIAATYARISRDVRRYDQDLQLFTGIATPVRDFEAIFEA
SYSFQVTPNVAVQPIVEYVIHPGGGAVDPNDPTQTRRIRDAIVFGVRTTAAF
>Mature_452_residues
MIIRASMAGRISSAALALLITMTLSSETRADDRAAAGGQTEVQKQLADWGIQFNLTYIGETFANPVGGVRNGAIYTGRLD
VGTTIDLEKLVGWSGATFHANAYQIHGDGLSRSYVGNLMLVSGVEALPASRLYEFWVEQALLGGKLLVRVGQQPSDVEFI
DSKYDDLFANSALGWPGITGIILPSGGPSPPLAVPGIRLKAQFTDQLVGYLAVFDGDAAPPGPGDPQLKNPHGILFRVQD
PPWVIGQLRYGFDLGSTALPGTIAAGAWYHFGSFDNQRFDSDGRALADPLSSGQPARMRRNQGVFAVFEQLLMRSPLDAA
KGAGLFVRTSVSPSDRNLISFYLDGGIQFTGFSAARPDDKFGIAATYARISRDVRRYDQDLQLFTGIATPVRDFEAIFEA
SYSFQVTPNVAVQPIVEYVIHPGGGAVDPNDPTQTRRIRDAIVFGVRTTAAF

Specific function: Substrate-selective channel for a variety of different sugars. Could potentially facilitate the diffusion of diverse compounds, dependent on the presence of a hydroxyl group, but is presumably restricted to carbohydrates. Involved in the transport of gluc

COG id: COG3659

COG function: function code M; Carbohydrate-selective porin

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007049 [H]

Pfam domain/function: PF04966 OprB [H]

EC number: NA

Molecular weight: Translated: 48640; Mature: 48640

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIRASMAGRISSAALALLITMTLSSETRADDRAAAGGQTEVQKQLADWGIQFNLTYIGE
CEEECCCCCCHHHHHHHHHHHEECCCCCCCCCHHCCCCHHHHHHHHHHCCEEEEEEECCH
TFANPVGGVRNGAIYTGRLDVGTTIDLEKLVGWSGATFHANAYQIHGDGLSRSYVGNLML
HHCCCCCCCCCCCEEEEEECCCCEEEHHHHHCCCCCEEECCEEEEECCCCCHHHHCCEEE
VSGVEALPASRLYEFWVEQALLGGKLLVRVGQQPSDVEFIDSKYDDLFANSALGWPGITG
ECCCHHCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHCHHHHHHHCCCCCCCCCEE
IILPSGGPSPPLAVPGIRLKAQFTDQLVGYLAVFDGDAAPPGPGDPQLKNPHGILFRVQD
EEECCCCCCCCEECCCEEEEEHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCEEEEEECC
PPWVIGQLRYGFDLGSTALPGTIAAGAWYHFGSFDNQRFDSDGRALADPLSSGQPARMRR
CCEEEEEEEECCCCCCCCCCCCHHCCCEEECCCCCCCCCCCCCCHHHCCCCCCCCHHHHH
NQGVFAVFEQLLMRSPLDAAKGAGLFVRTSVSPSDRNLISFYLDGGIQFTGFSAARPDDK
CCCHHHHHHHHHHCCCCCHHCCCCEEEEECCCCCCCCEEEEEECCCEEEECCCCCCCCCC
FGIAATYARISRDVRRYDQDLQLFTGIATPVRDFEAIFEASYSFQVTPNVAVQPIVEYVI
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHC
HPGGGAVDPNDPTQTRRIRDAIVFGVRTTAAF
CCCCCCCCCCCCHHHHHHHHHHHEEEHHHCCC
>Mature Secondary Structure
MIIRASMAGRISSAALALLITMTLSSETRADDRAAAGGQTEVQKQLADWGIQFNLTYIGE
CEEECCCCCCHHHHHHHHHHHEECCCCCCCCCHHCCCCHHHHHHHHHHCCEEEEEEECCH
TFANPVGGVRNGAIYTGRLDVGTTIDLEKLVGWSGATFHANAYQIHGDGLSRSYVGNLML
HHCCCCCCCCCCCEEEEEECCCCEEEHHHHHCCCCCEEECCEEEEECCCCCHHHHCCEEE
VSGVEALPASRLYEFWVEQALLGGKLLVRVGQQPSDVEFIDSKYDDLFANSALGWPGITG
ECCCHHCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHCHHHHHHHCCCCCCCCCEE
IILPSGGPSPPLAVPGIRLKAQFTDQLVGYLAVFDGDAAPPGPGDPQLKNPHGILFRVQD
EEECCCCCCCCEECCCEEEEEHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCEEEEEECC
PPWVIGQLRYGFDLGSTALPGTIAAGAWYHFGSFDNQRFDSDGRALADPLSSGQPARMRR
CCEEEEEEEECCCCCCCCCCCCHHCCCEEECCCCCCCCCCCCCCHHHCCCCCCCCHHHHH
NQGVFAVFEQLLMRSPLDAAKGAGLFVRTSVSPSDRNLISFYLDGGIQFTGFSAARPDDK
CCCHHHHHHHHHHCCCCCHHCCCCEEEEECCCCCCCCEEEEEECCCEEEECCCCCCCCCC
FGIAATYARISRDVRRYDQDLQLFTGIATPVRDFEAIFEASYSFQVTPNVAVQPIVEYVI
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHC
HPGGGAVDPNDPTQTRRIRDAIVFGVRTTAAF
CCCCCCCCCCCCHHHHHHHHHHHEEEHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8125108; 10984043; 2450582; 8132494; 7768797 [H]