| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is ygjG [C]
Identifier: 146342881
GI number: 146342881
Start: 6284386
End: 6285729
Strand: Direct
Name: ygjG [C]
Synonym: BRADO6061
Alternate gene names: 146342881
Gene position: 6284386-6285729 (Clockwise)
Preceding gene: 146342880
Following gene: 146342882
Centisome position: 84.28
GC content: 67.11
Gene sequence:
>1344_bases ATGCTGGACAAGAGCCCCCGCCCCGCCGTCACCGTTCCGAATGATCTTGCCGCGCATTGGATGCCGTTCACCGCGAACCG CGCCTTCAAGAAGAATCCGCGCCTGCTCGCCGGCGCCAAGGGCATGCACTACATCACCGTCGATGGCCGCAACATCATCG ATGCCGCAGCCGGCATGTGGTGCTGCAACGCCGGCCATGGCCGCACCGAGATCGCCGAGGCGATCGGCAAGCAGGCCGCA GCGCTCGACTATGCGCCGCCGTTCCAGTTCGGCATTCCCCAGGCCTTCGAGCTCGCCAACCGCATCGCCGATCTCGCCCC CGCCGGGCTGGACCATGTGTTCTTCTGCAACTCCGGCTCGGAGGCCGCCGACACCGCGCTGAAGATGGCGCTCGCCTATC ACCAGATCAACGGCCAGGGCAGCCGCACCCGCCTGATCGGCCGCGTCCGCGGCTATCACGGCGTCGGCTTCGGCGGCACC TCGGTCGGCGGCATCGTCAACAACCGCAAGCTGTTCGGCACGCTGCTCACGGGCGTCGACCACATTCCGGCGACCTATGA CCGCGAGAAGCAGGCCTTCACCAAGGGCGAGCCTGAATACGGCGCGCACTTCGCCGAGGAGCTGGAAAACCTCGTCGCGT TGCACGGCGCCAACACCATCGCTGCCGTCATCGTCGAGCCGATGGCCGGCTCCACCGGCGTCATCCCCGCGCCGAAGGGC TATCTCAAGCGCCTGCGCGAGATCACCCAGAAGCACGGCATCCTCCTGATCTTCGACGAGGTCATCACCGGCTTCGGCCG TCTCGGCCACGCCTTCGCCGCCGAGCGCTATGGCGTGACGCCGGACCTCTTGACCTTCGCCAAGGGCGTCACCAACGGCG CGGCGCCGATGGGCGGCGTGCTGGTGCGCGACACCATCCACGACGCCTTCATGAGCGGCCCGGAGCACATGGTCGAGTTC ACCCACGGCTACACCTACTCGGCGCATCCGATCGCCTGCGCCGCCGGCCTCGCCACGCTCGACATCTATCGCGACCACAA GCTGTTCGAGCATGCCAAGGCGATCGAGCCGAAATGGGCCGACGCCGTGATGTCGCTGAAGGGGCTGCCCAACGTCCTCG ACATCCGCACCGTTGGTCTGACCGCCGGCATCGACCTCGCCCCGCTGCCCGACGCCGTCGGCAAGCGCGGCTACTCCGCG ATGGAGCAGGCCTTCCACAACACCGACCTGATGCTGCGCATCGCCGGCGATACCCTGGCTCTGACCCCGCCGCTGATCAT CAACGAGGACCAGATCGGCGAGATCGTCGAGAAGGTCGGCAAGGTTATCAAGGCCGTGGCGTAA
Upstream 100 bases:
>100_bases GCACGATCCGTTTCGGTCAGTGTCTGGCAATCGCTCCGCCACCTTTCCGGGTCATGCTGTCGCCGTCGTACAATCTGCCT CAACTCCCCGAGAGGTCCCC
Downstream 100 bases:
>100_bases GCCGCGCGGCATCGTCATCAATCACGACAAAATGGCGGCCCCCGTGGCCGCCATTTTCGTTGTTCCTCCAACGACGTCAT TCCGGGGCAATCGTCATGTA
Product: beta alanine--pyruvate transaminase
Products: NA
Alternate protein names: Omega-APT; Beta-alanine--pyruvate aminotransferase [H]
Number of amino acids: Translated: 447; Mature: 447
Protein sequence:
>447_residues MLDKSPRPAVTVPNDLAAHWMPFTANRAFKKNPRLLAGAKGMHYITVDGRNIIDAAAGMWCCNAGHGRTEIAEAIGKQAA ALDYAPPFQFGIPQAFELANRIADLAPAGLDHVFFCNSGSEAADTALKMALAYHQINGQGSRTRLIGRVRGYHGVGFGGT SVGGIVNNRKLFGTLLTGVDHIPATYDREKQAFTKGEPEYGAHFAEELENLVALHGANTIAAVIVEPMAGSTGVIPAPKG YLKRLREITQKHGILLIFDEVITGFGRLGHAFAAERYGVTPDLLTFAKGVTNGAAPMGGVLVRDTIHDAFMSGPEHMVEF THGYTYSAHPIACAAGLATLDIYRDHKLFEHAKAIEPKWADAVMSLKGLPNVLDIRTVGLTAGIDLAPLPDAVGKRGYSA MEQAFHNTDLMLRIAGDTLALTPPLIINEDQIGEIVEKVGKVIKAVA
Sequences:
>Translated_447_residues MLDKSPRPAVTVPNDLAAHWMPFTANRAFKKNPRLLAGAKGMHYITVDGRNIIDAAAGMWCCNAGHGRTEIAEAIGKQAA ALDYAPPFQFGIPQAFELANRIADLAPAGLDHVFFCNSGSEAADTALKMALAYHQINGQGSRTRLIGRVRGYHGVGFGGT SVGGIVNNRKLFGTLLTGVDHIPATYDREKQAFTKGEPEYGAHFAEELENLVALHGANTIAAVIVEPMAGSTGVIPAPKG YLKRLREITQKHGILLIFDEVITGFGRLGHAFAAERYGVTPDLLTFAKGVTNGAAPMGGVLVRDTIHDAFMSGPEHMVEF THGYTYSAHPIACAAGLATLDIYRDHKLFEHAKAIEPKWADAVMSLKGLPNVLDIRTVGLTAGIDLAPLPDAVGKRGYSA MEQAFHNTDLMLRIAGDTLALTPPLIINEDQIGEIVEKVGKVIKAVA >Mature_447_residues MLDKSPRPAVTVPNDLAAHWMPFTANRAFKKNPRLLAGAKGMHYITVDGRNIIDAAAGMWCCNAGHGRTEIAEAIGKQAA ALDYAPPFQFGIPQAFELANRIADLAPAGLDHVFFCNSGSEAADTALKMALAYHQINGQGSRTRLIGRVRGYHGVGFGGT SVGGIVNNRKLFGTLLTGVDHIPATYDREKQAFTKGEPEYGAHFAEELENLVALHGANTIAAVIVEPMAGSTGVIPAPKG YLKRLREITQKHGILLIFDEVITGFGRLGHAFAAERYGVTPDLLTFAKGVTNGAAPMGGVLVRDTIHDAFMSGPEHMVEF THGYTYSAHPIACAAGLATLDIYRDHKLFEHAKAIEPKWADAVMSLKGLPNVLDIRTVGLTAGIDLAPLPDAVGKRGYSA MEQAFHNTDLMLRIAGDTLALTPPLIINEDQIGEIVEKVGKVIKAVA
Specific function: Catalyzes transamination between a variety of omega- amino acids, mono and diamines, and pyruvate. Plays a pivotal role in the metabolism of the omega amino acids [H]
COG id: COG0161
COG function: function code H; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI4557809, Length=414, Percent_Identity=26.8115942028986, Blast_Score=120, Evalue=2e-27, Organism=Homo sapiens, GI13994255, Length=440, Percent_Identity=26.1363636363636, Blast_Score=119, Evalue=6e-27, Organism=Homo sapiens, GI37574042, Length=434, Percent_Identity=26.4976958525346, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI226442705, Length=434, Percent_Identity=26.7281105990783, Blast_Score=113, Evalue=3e-25, Organism=Homo sapiens, GI226442709, Length=398, Percent_Identity=27.6381909547739, Blast_Score=111, Evalue=1e-24, Organism=Homo sapiens, GI284507298, Length=329, Percent_Identity=27.6595744680851, Blast_Score=110, Evalue=3e-24, Organism=Homo sapiens, GI24119277, Length=439, Percent_Identity=25.5125284738041, Blast_Score=103, Evalue=3e-22, Organism=Homo sapiens, GI188536080, Length=283, Percent_Identity=24.7349823321555, Blast_Score=79, Evalue=1e-14, Organism=Homo sapiens, GI38679950, Length=283, Percent_Identity=24.7349823321555, Blast_Score=79, Evalue=1e-14, Organism=Homo sapiens, GI38679946, Length=283, Percent_Identity=24.7349823321555, Blast_Score=79, Evalue=1e-14, Organism=Escherichia coli, GI145693181, Length=407, Percent_Identity=28.2555282555283, Blast_Score=155, Evalue=5e-39, Organism=Escherichia coli, GI1786991, Length=428, Percent_Identity=28.5046728971963, Blast_Score=147, Evalue=1e-36, Organism=Escherichia coli, GI1789759, Length=399, Percent_Identity=28.8220551378446, Blast_Score=140, Evalue=2e-34, Organism=Escherichia coli, GI1788044, Length=387, Percent_Identity=29.7157622739018, Blast_Score=135, Evalue=8e-33, Organism=Escherichia coli, GI1789016, Length=355, Percent_Identity=28.169014084507, Blast_Score=122, Evalue=3e-29, Organism=Escherichia coli, GI1787560, Length=343, Percent_Identity=29.1545189504373, Blast_Score=110, Evalue=2e-25, Organism=Escherichia coli, GI1786349, Length=365, Percent_Identity=27.6712328767123, Blast_Score=89, Evalue=5e-19, Organism=Caenorhabditis elegans, GI32564660, Length=445, Percent_Identity=28.0898876404494, Blast_Score=136, Evalue=3e-32, Organism=Caenorhabditis elegans, GI71992977, Length=440, Percent_Identity=27.5, Blast_Score=126, Evalue=2e-29, Organism=Caenorhabditis elegans, GI25144271, Length=424, Percent_Identity=25.7075471698113, Blast_Score=121, Evalue=7e-28, Organism=Caenorhabditis elegans, GI25144274, Length=244, Percent_Identity=31.1475409836066, Blast_Score=107, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6323470, Length=442, Percent_Identity=25.7918552036199, Blast_Score=136, Evalue=8e-33, Organism=Saccharomyces cerevisiae, GI6324386, Length=424, Percent_Identity=25.7075471698113, Blast_Score=125, Evalue=1e-29, Organism=Saccharomyces cerevisiae, GI6324432, Length=421, Percent_Identity=27.0783847980998, Blast_Score=120, Evalue=5e-28, Organism=Drosophila melanogaster, GI21357415, Length=430, Percent_Identity=25.8139534883721, Blast_Score=125, Evalue=6e-29, Organism=Drosophila melanogaster, GI161085790, Length=428, Percent_Identity=26.4018691588785, Blast_Score=116, Evalue=3e-26, Organism=Drosophila melanogaster, GI28574759, Length=411, Percent_Identity=27.007299270073, Blast_Score=114, Evalue=1e-25, Organism=Drosophila melanogaster, GI21356575, Length=431, Percent_Identity=24.8259860788863, Blast_Score=99, Evalue=6e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005814 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00202 Aminotran_3 [H]
EC number: =2.6.1.18 [H]
Molecular weight: Translated: 47786; Mature: 47786
Theoretical pI: Translated: 7.16; Mature: 7.16
Prosite motif: PS00600 AA_TRANSFER_CLASS_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDKSPRPAVTVPNDLAAHWMPFTANRAFKKNPRLLAGAKGMHYITVDGRNIIDAAAGMW CCCCCCCCCEECCCHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEEECCCHHHHHHCCCE CCNAGHGRTEIAEAIGKQAAALDYAPPFQFGIPQAFELANRIADLAPAGLDHVFFCNSGS EECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCC EAADTALKMALAYHQINGQGSRTRLIGRVRGYHGVGFGGTSVGGIVNNRKLFGTLLTGVD HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC HIPATYDREKQAFTKGEPEYGAHFAEELENLVALHGANTIAAVIVEPMAGSTGVIPAPKG CCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCHH YLKRLREITQKHGILLIFDEVITGFGRLGHAFAAERYGVTPDLLTFAKGVTNGAAPMGGV HHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCE LVRDTIHDAFMSGPEHMVEFTHGYTYSAHPIACAAGLATLDIYRDHKLFEHAKAIEPKWA EHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH DAVMSLKGLPNVLDIRTVGLTAGIDLAPLPDAVGKRGYSAMEQAFHNTDLMLRIAGDTLA HHHHHHHCCCCHHEEEEECEECCCCCCCCCHHHHHCCHHHHHHHHCCCCEEEEECCCEEE LTPPLIINEDQIGEIVEKVGKVIKAVA ECCCEEECCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MLDKSPRPAVTVPNDLAAHWMPFTANRAFKKNPRLLAGAKGMHYITVDGRNIIDAAAGMW CCCCCCCCCEECCCHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEEECCCHHHHHHCCCE CCNAGHGRTEIAEAIGKQAAALDYAPPFQFGIPQAFELANRIADLAPAGLDHVFFCNSGS EECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCC EAADTALKMALAYHQINGQGSRTRLIGRVRGYHGVGFGGTSVGGIVNNRKLFGTLLTGVD HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC HIPATYDREKQAFTKGEPEYGAHFAEELENLVALHGANTIAAVIVEPMAGSTGVIPAPKG CCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCHH YLKRLREITQKHGILLIFDEVITGFGRLGHAFAAERYGVTPDLLTFAKGVTNGAAPMGGV HHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCE LVRDTIHDAFMSGPEHMVEFTHGYTYSAHPIACAAGLATLDIYRDHKLFEHAKAIEPKWA EHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH DAVMSLKGLPNVLDIRTVGLTAGIDLAPLPDAVGKRGYSAMEQAFHNTDLMLRIAGDTLA HHHHHHHCCCCHHEEEEECEECCCCCCCCCHHHHHCCHHHHHHHHCCCCEEEEECCCEEE LTPPLIINEDQIGEIVEKVGKVIKAVA ECCCEEECCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1618757; 6822556; 2500426 [H]