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The map label for this gene is rna [C]

Identifier: 146342871

GI number: 146342871

Start: 6275516

End: 6276220

Strand: Direct

Name: rna [C]

Synonym: BRADO6051

Alternate gene names: 146342871

Gene position: 6275516-6276220 (Clockwise)

Preceding gene: 146342870

Following gene: 146342872

Centisome position: 84.16

GC content: 65.25

Gene sequence:

>705_bases
ATGTTTGATGACCTGCGCCGACCAGCCGTCCTGCTTGCCAGAACCGTCGTTTGTTTGGCCCTGCTGCTGGGTGCGCTGGA
CGCTGCACCCGTGGAGGCTCAGGACCGCCGTCAGAACGCGCCGGGCGCGTTCGACTTCTACGTGCTGTCGCTCTCGTGGT
CGCCATCATTCTGCGCCGAGGCCGAGGAGCGTGGCGGACGCGGCAGCCGCTCGCAGCAATGCAGCGGACGGCCCTACTCC
TTCGTCGTGCATGGGCTGTGGCCGCAATACGAGGCCGGCTACCCCGAATATTGCGAGCAGCCGTCGCCCCGCCTGCCGCG
CAACATCATGACCTCGATGCTCGACCTGATGCCGGCGCCCGGCTTGATCTACAATGAGTGGGACAAGCACGGCACCTGCT
CCGGTCTGTCGGCCAAGGCCTATTTCGAGGCCATCCGCAAGGCCCGCGCCGTGATCAAGATCCCGCCGGAGTTCCTGGAC
CTTGCGGAAGCCAAGACATTGGCGCCCGCCGCGATCGAGGACGCGTTCATCAAGGCCAATCCCAAGTTGACCAATTCAGC
CATCGCGGTGACCTGCAATCGAACCCGGCTCAGCGAGGTTCGGATCTGCCTCTCCAAGGACCTCGAATTCCGTAGCTGCG
ACGAGGTCGACCGTCAGGCGTGCCGCCGTGACGAGGTCAACATGCCGCCGGTGCGCGGCGGCTAG

Upstream 100 bases:

>100_bases
AAAATCACGGGTGACGATCGGCTGCTCCCGGGCAGCCGTTTTTGTTCTTGAAATGTTCCTGGGGGCTGCTAGGTTCCTGG
CATTGTCCGGGGAGTTCGCC

Downstream 100 bases:

>100_bases
CCCACAACCTCGCGCTCGGCCGGCGGACACCCGCGCCTGCCGAGAGCGGCCGCAGGCCAACGACGGGGTACCTTTTCCTC
GCGGAACGGCGTAACTGCTG

Product: putative ribonuclease T2 family protein

Products: 3'- Phosphomononucleotides; 3'-Phosphooligonucleotides [C]

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MFDDLRRPAVLLARTVVCLALLLGALDAAPVEAQDRRQNAPGAFDFYVLSLSWSPSFCAEAEERGGRGSRSQQCSGRPYS
FVVHGLWPQYEAGYPEYCEQPSPRLPRNIMTSMLDLMPAPGLIYNEWDKHGTCSGLSAKAYFEAIRKARAVIKIPPEFLD
LAEAKTLAPAAIEDAFIKANPKLTNSAIAVTCNRTRLSEVRICLSKDLEFRSCDEVDRQACRRDEVNMPPVRGG

Sequences:

>Translated_234_residues
MFDDLRRPAVLLARTVVCLALLLGALDAAPVEAQDRRQNAPGAFDFYVLSLSWSPSFCAEAEERGGRGSRSQQCSGRPYS
FVVHGLWPQYEAGYPEYCEQPSPRLPRNIMTSMLDLMPAPGLIYNEWDKHGTCSGLSAKAYFEAIRKARAVIKIPPEFLD
LAEAKTLAPAAIEDAFIKANPKLTNSAIAVTCNRTRLSEVRICLSKDLEFRSCDEVDRQACRRDEVNMPPVRGG
>Mature_234_residues
MFDDLRRPAVLLARTVVCLALLLGALDAAPVEAQDRRQNAPGAFDFYVLSLSWSPSFCAEAEERGGRGSRSQQCSGRPYS
FVVHGLWPQYEAGYPEYCEQPSPRLPRNIMTSMLDLMPAPGLIYNEWDKHGTCSGLSAKAYFEAIRKARAVIKIPPEFLD
LAEAKTLAPAAIEDAFIKANPKLTNSAIAVTCNRTRLSEVRICLSKDLEFRSCDEVDRQACRRDEVNMPPVRGG

Specific function: One Of The Few RNAses That Cleaves The Phosphodiester Bond Between Any Two Nucleotide. Shows A Preference For Cytidylic Or Guanylic Acid. [C]

COG id: COG3719

COG function: function code J; Ribonuclease I

Gene ontology:

Cell location: Periplasmic Protein And Cytoplasm. [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase T2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001568
- InterPro:   IPR018188 [H]

Pfam domain/function: PF00445 Ribonuclease_T2 [H]

EC number: 3.1.27.6 [C]

Molecular weight: Translated: 25956; Mature: 25956

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: PS00530 RNASE_T2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDDLRRPAVLLARTVVCLALLLGALDAAPVEAQDRRQNAPGAFDFYVLSLSWSPSFCAE
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEEEEECCCHHHHH
AEERGGRGSRSQQCSGRPYSFVVHGLWPQYEAGYPEYCEQPSPRLPRNIMTSMLDLMPAP
HHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCC
GLIYNEWDKHGTCSGLSAKAYFEAIRKARAVIKIPPEFLDLAEAKTLAPAAIEDAFIKAN
CCEECCCCCCCCCCCCCHHHHHHHHHHHHHEEECCHHHHHHHHHHHCCHHHHHHHHHCCC
PKLTNSAIAVTCNRTRLSEVRICLSKDLEFRSCDEVDRQACRRDEVNMPPVRGG
CCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MFDDLRRPAVLLARTVVCLALLLGALDAAPVEAQDRRQNAPGAFDFYVLSLSWSPSFCAE
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEEEEECCCHHHHH
AEERGGRGSRSQQCSGRPYSFVVHGLWPQYEAGYPEYCEQPSPRLPRNIMTSMLDLMPAP
HHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCC
GLIYNEWDKHGTCSGLSAKAYFEAIRKARAVIKIPPEFLDLAEAKTLAPAAIEDAFIKAN
CCEECCCCCCCCCCCCCHHHHHHHHHHHHHEEECCHHHHHHHHHHHCCHHHHHHHHHCCC
PKLTNSAIAVTCNRTRLSEVRICLSKDLEFRSCDEVDRQACRRDEVNMPPVRGG
CCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Nucleotides [C]

Specific reaction: Endonucleolytic Cleavage With 2',3'-Cyclic Phosphate Intermediates. [C]

General reaction: Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]