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The map label for this gene is petR [H]

Identifier: 146342861

GI number: 146342861

Start: 6265393

End: 6266124

Strand: Direct

Name: petR [H]

Synonym: BRADO6041

Alternate gene names: 146342861

Gene position: 6265393-6266124 (Clockwise)

Preceding gene: 146342860

Following gene: 146342862

Centisome position: 84.02

GC content: 68.99

Gene sequence:

>732_bases
GTGACCGTGACGATCGCCGCCATCGCACCGCATCCGCCGCAAACGCCCGCCGACGACGCGCCGCATCTCCTGCTCGTCGA
CGACGACCGCCGCATCCGCGATCTGCTGTCGCGCTTCCTGCGCGGCGAGGGCTATCGCGTCACCACGGCGGCCAGCGCCA
GCGATGCCCGCGCCAAGCTGACCGGCCTGCATTTCGATCTCCTGATTCTCGACGTGATGATGCCCGGCGAGAGCGGCTTC
GACCTCGCCCGCTCGATCCGCACGCAATCCTCGGTGCCGATCGTGATGCTGACCGCGCGGTCCGAGCCGGAAAGCCGCAT
CGAGGGCCTGCAACTCGGCGCGGACGACTACGTTGCAAAACCGTTCGAGCCGCGCGAGCTGGCGCTGCGCATCGGCAACA
TCCTCAAGCGCGCCGCGCCGCCGCCGGCCGAGGAGGTCGTCGAGCAGATCAGCTTCGGCCCGTTCATCTATCATCTGGCG
CGCGGCGAATTGAAACAGGGCGACGAGATCGTCCACCTCACCGACCGCGAGCGCGAGATGCTGCGCATTCTCGCCAATGC
CCGCGGCGAGACCGTGCCGCGCGGCGCGCTGACCGGCAACGGCACCGTCAACGAGCGCGCCGTCGACGTCCAGATCAACC
GCCTCCGCCGCAAGCTGGAGAGCGATCCGGCCAATCCCCTGTTCCTGCAGGCCGTGCGCGGCATCGGCTACCGGCTGATG
ACATCGGGCTGA

Upstream 100 bases:

>100_bases
CCGAGAAGGTCCGGCAATTCCTGCGCGCGATGATCGATCGCGACGATCCGGACAAGGTGCTTGAAGCCATATTCAGAACG
CCTGTCGCCGCCGCCAAGGA

Downstream 100 bases:

>100_bases
GCATGAAGAACTGCTCTGACATCACGCGCGTGTTTTTCGCAGGTGGCGATCATGCTCATCCGCTTCTCTCGATTGCTGAG
GCTTACGACGCCCTGGCCGC

Product: putative two-component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MTVTIAAIAPHPPQTPADDAPHLLLVDDDRRIRDLLSRFLRGEGYRVTTAASASDARAKLTGLHFDLLILDVMMPGESGF
DLARSIRTQSSVPIVMLTARSEPESRIEGLQLGADDYVAKPFEPRELALRIGNILKRAAPPPAEEVVEQISFGPFIYHLA
RGELKQGDEIVHLTDREREMLRILANARGETVPRGALTGNGTVNERAVDVQINRLRRKLESDPANPLFLQAVRGIGYRLM
TSG

Sequences:

>Translated_243_residues
MTVTIAAIAPHPPQTPADDAPHLLLVDDDRRIRDLLSRFLRGEGYRVTTAASASDARAKLTGLHFDLLILDVMMPGESGF
DLARSIRTQSSVPIVMLTARSEPESRIEGLQLGADDYVAKPFEPRELALRIGNILKRAAPPPAEEVVEQISFGPFIYHLA
RGELKQGDEIVHLTDREREMLRILANARGETVPRGALTGNGTVNERAVDVQINRLRRKLESDPANPLFLQAVRGIGYRLM
TSG
>Mature_242_residues
TVTIAAIAPHPPQTPADDAPHLLLVDDDRRIRDLLSRFLRGEGYRVTTAASASDARAKLTGLHFDLLILDVMMPGESGFD
LARSIRTQSSVPIVMLTARSEPESRIEGLQLGADDYVAKPFEPRELALRIGNILKRAAPPPAEEVVEQISFGPFIYHLAR
GELKQGDEIVHLTDREREMLRILANARGETVPRGALTGNGTVNERAVDVQINRLRRKLESDPANPLFLQAVRGIGYRLMT
SG

Specific function: Necessary for photosynthetic and respiratory growth. Probable promoter-specific protein mediating the interaction between DNA and RNA polymerase [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=232, Percent_Identity=42.2413793103448, Blast_Score=167, Evalue=5e-43,
Organism=Escherichia coli, GI1788394, Length=227, Percent_Identity=35.2422907488987, Blast_Score=137, Evalue=7e-34,
Organism=Escherichia coli, GI1786599, Length=232, Percent_Identity=34.9137931034483, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1790863, Length=232, Percent_Identity=34.4827586206897, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1786784, Length=224, Percent_Identity=33.0357142857143, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1787229, Length=229, Percent_Identity=34.4978165938865, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1786911, Length=224, Percent_Identity=33.9285714285714, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI2367329, Length=230, Percent_Identity=34.3478260869565, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI87082012, Length=223, Percent_Identity=28.2511210762332, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1790860, Length=227, Percent_Identity=33.0396475770925, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787375, Length=221, Percent_Identity=31.6742081447964, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789402, Length=223, Percent_Identity=31.390134529148, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1790552, Length=226, Percent_Identity=30.9734513274336, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI145693140, Length=228, Percent_Identity=29.3859649122807, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788550, Length=117, Percent_Identity=32.4786324786325, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790299, Length=102, Percent_Identity=34.3137254901961, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788713, Length=120, Percent_Identity=39.1666666666667, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1790437, Length=106, Percent_Identity=34.9056603773585, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1788191, Length=125, Percent_Identity=32, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26774; Mature: 26643

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVTIAAIAPHPPQTPADDAPHLLLVDDDRRIRDLLSRFLRGEGYRVTTAASASDARAKL
CEEEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
TGLHFDLLILDVMMPGESGFDLARSIRTQSSVPIVMLTARSEPESRIEGLQLGADDYVAK
HCCHHHHHHHEECCCCCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHEECCCCCCCCC
PFEPRELALRIGNILKRAAPPPAEEVVEQISFGPFIYHLARGELKQGDEIVHLTDREREM
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEECHHHHHH
LRILANARGETVPRGALTGNGTVNERAVDVQINRLRRKLESDPANPLFLQAVRGIGYRLM
HHHHHHCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEE
TSG
ECC
>Mature Secondary Structure 
TVTIAAIAPHPPQTPADDAPHLLLVDDDRRIRDLLSRFLRGEGYRVTTAASASDARAKL
EEEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
TGLHFDLLILDVMMPGESGFDLARSIRTQSSVPIVMLTARSEPESRIEGLQLGADDYVAK
HCCHHHHHHHEECCCCCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHEECCCCCCCCC
PFEPRELALRIGNILKRAAPPPAEEVVEQISFGPFIYHLARGELKQGDEIVHLTDREREM
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEECHHHHHH
LRILANARGETVPRGALTGNGTVNERAVDVQINRLRRKLESDPANPLFLQAVRGIGYRLM
HHHHHHCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEE
TSG
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1323023 [H]