Click here to switch to the map view.

The map label for this gene is yfiH [C]

Identifier: 146342823

GI number: 146342823

Start: 6230111

End: 6230857

Strand: Reverse

Name: yfiH [C]

Synonym: BRADO6002

Alternate gene names: 146342823

Gene position: 6230857-6230111 (Counterclockwise)

Preceding gene: 146342824

Following gene: 146342822

Centisome position: 83.56

GC content: 67.2

Gene sequence:

>747_bases
ATGTCCGCCATTCCGGGCCTGCGCCACGCGTTCTTCACTCGCGAGGGTGGCGTGTCCGAGGGCATCTATGCCGGTCTCAA
TGGCGGGCTCGGATCGAACGACGTGCCGGACAGCGTCCGCGAAAACCGCCGCCGCATGGCGGCTCAACTCGGCGTCGCGC
CGGAGCACTTCCTGAGCGTGCACCAGATCCATTCGCCTGACGTCGTGGTCGCGACCGGGCCGTGGGACGGCGCCGCCAGG
CCGAAGGCCGACGCGCTGGTCACCGCGACGCCCAACCTTGCGATCGGCGTCACCACGGCGGATTGCGGGCCGATCCTGTT
CGTCGATCCCGAAAGGCGCGTCATCGGCGCGGCCCATGCGGGCTGGAAGGGGGCGCTGACGGGCGTGCTCGAATCGACGC
TGCAGGCGATGGAAGAGCTCGGCGCCGAGCGCGGCCGGATCATCGCCGCGATCGGTCCGTTGATCCGTCAGCCGAGCTAC
GAAGTGGGCGCCGAATTCGTTACCCGCTTCATCGATGACGATGCCGAGCATGCGCGCTTCTTCCTGCCCTCGACGCGCGA
GGGACACGCGATGTTCGACCTCGGCGGCTTCATCCGGATGCGGTTGGAGACCGCCGGCATCTTGCTGATCGACGACCTCG
GGCTCGACACCTATTCCGACGAGCGCTTCTTCAGTTACCGCCGCTCGGTACACCGGAAAGAACCGGACTACGGGCGGCAT
GTCCATGCGATCATGCTCGAAGGCTGA

Upstream 100 bases:

>100_bases
TCGGCGTATCCGATCCGTCGATTCCCGTGCTCGCCGGTATCAGCGACGAGCACACCAGCGAGAAGACCGGAGGCGCATGA
TGCTGCTGTCATCGGATGTG

Downstream 100 bases:

>100_bases
AGCGGGGCGCGATTGTGGCCGCATGTGGATTGCTTAACCCTTTCTCTACAAGTGGGTGCACTCTGTCCCGTTCTGTGGCA
GCCGCGACCTAGACGTTAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MSAIPGLRHAFFTREGGVSEGIYAGLNGGLGSNDVPDSVRENRRRMAAQLGVAPEHFLSVHQIHSPDVVVATGPWDGAAR
PKADALVTATPNLAIGVTTADCGPILFVDPERRVIGAAHAGWKGALTGVLESTLQAMEELGAERGRIIAAIGPLIRQPSY
EVGAEFVTRFIDDDAEHARFFLPSTREGHAMFDLGGFIRMRLETAGILLIDDLGLDTYSDERFFSYRRSVHRKEPDYGRH
VHAIMLEG

Sequences:

>Translated_248_residues
MSAIPGLRHAFFTREGGVSEGIYAGLNGGLGSNDVPDSVRENRRRMAAQLGVAPEHFLSVHQIHSPDVVVATGPWDGAAR
PKADALVTATPNLAIGVTTADCGPILFVDPERRVIGAAHAGWKGALTGVLESTLQAMEELGAERGRIIAAIGPLIRQPSY
EVGAEFVTRFIDDDAEHARFFLPSTREGHAMFDLGGFIRMRLETAGILLIDDLGLDTYSDERFFSYRRSVHRKEPDYGRH
VHAIMLEG
>Mature_247_residues
SAIPGLRHAFFTREGGVSEGIYAGLNGGLGSNDVPDSVRENRRRMAAQLGVAPEHFLSVHQIHSPDVVVATGPWDGAARP
KADALVTATPNLAIGVTTADCGPILFVDPERRVIGAAHAGWKGALTGVLESTLQAMEELGAERGRIIAAIGPLIRQPSYE
VGAEFVTRFIDDDAEHARFFLPSTREGHAMFDLGGFIRMRLETAGILLIDDLGLDTYSDERFFSYRRSVHRKEPDYGRHV
HAIMLEG

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Homo sapiens, GI190194374, Length=240, Percent_Identity=30.8333333333333, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI190194372, Length=240, Percent_Identity=30.8333333333333, Blast_Score=84, Evalue=2e-16,
Organism=Escherichia coli, GI1788945, Length=217, Percent_Identity=37.3271889400922, Blast_Score=115, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 26928; Mature: 26797

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAIPGLRHAFFTREGGVSEGIYAGLNGGLGSNDVPDSVRENRRRMAAQLGVAPEHFLSV
CCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
HQIHSPDVVVATGPWDGAARPKADALVTATPNLAIGVTTADCGPILFVDPERRVIGAAHA
HHCCCCCEEEEECCCCCCCCCCCCEEEEECCCEEEEEEECCCCEEEEECCCCCEEECCCC
GWKGALTGVLESTLQAMEELGAERGRIIAAIGPLIRQPSYEVGAEFVTRFIDDDAEHARF
CCHHHHHHHHHHHHHHHHHHCHHCCEEEEEHHHHHHCCCHHHHHHHHHHHHCCCCCCCEE
FLPSTREGHAMFDLGGFIRMRLETAGILLIDDLGLDTYSDERFFSYRRSVHRKEPDYGRH
ECCCCCCCCEEEECCCEEEEEEEECCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCE
VHAIMLEG
EEEEEECC
>Mature Secondary Structure 
SAIPGLRHAFFTREGGVSEGIYAGLNGGLGSNDVPDSVRENRRRMAAQLGVAPEHFLSV
CCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
HQIHSPDVVVATGPWDGAARPKADALVTATPNLAIGVTTADCGPILFVDPERRVIGAAHA
HHCCCCCEEEEECCCCCCCCCCCCEEEEECCCEEEEEEECCCCEEEEECCCCCEEECCCC
GWKGALTGVLESTLQAMEELGAERGRIIAAIGPLIRQPSYEVGAEFVTRFIDDDAEHARF
CCHHHHHHHHHHHHHHHHHHCHHCCEEEEEHHHHHHCCCHHHHHHHHHHHHCCCCCCCEE
FLPSTREGHAMFDLGGFIRMRLETAGILLIDDLGLDTYSDERFFSYRRSVHRKEPDYGRH
ECCCCCCCCEEEECCCEEEEEEEECCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCE
VHAIMLEG
EEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]