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The map label for this gene is rhrA [H]

Identifier: 146342756

GI number: 146342756

Start: 6147653

End: 6148612

Strand: Reverse

Name: rhrA [H]

Synonym: BRADO5930

Alternate gene names: 146342756

Gene position: 6148612-6147653 (Counterclockwise)

Preceding gene: 146342759

Following gene: 146342755

Centisome position: 82.46

GC content: 66.77

Gene sequence:

>960_bases
ATGACCATCGTCAGGAAAATGCTGTCTACCGACATGCTGCCGAAGGCGCTCGACGACAGGCAGCGCTTCTTGTGCTTTGC
GGAATTGTTCGAGCATTTCTCCAACACCGGTGAGCTCGATCCCGCCGAGGACGTGCCGTTTCGCGCTGCGATGAACGCCA
TCCACATCGGCACGACGCTTCTCGGCCGCTGCGACGGCACTTTTACGCGGGTGAGGCGCGAACGGCGCCAAGTGCTCGCC
ACCAATGACGATCGCTATTGTCTGGCGCGCAACGCGGGCCACCGCGAGGCGATGGTCGTTCATCGGGGCCGCGAGTTCGT
TCTGCGCCCCGGCGCGATGGTGCTGCTCAAGCTCGACGAGCCGTTCTTCAGCGCCGATGGTGCGAGCCACAAGCGCTTCG
TCAACGTGCATCTGCCGATGGTGACGCTGCGCTCGATGGTGCCCGGTGTCGACGATCTGGTCGGCCGGGAGTTGGAGCCG
GGCGGCGCGCTGTCGCTGGCGATGGACTACAGCGAGCTGCTGCTCGCGCGTCCGACTGCGGCCGACGAGGCGGGCACAGC
CGTTGCGCAGCATCTGCTCGATCTGGTCGCGCTCGGCCTCGGCGTGCGCGGCGAGGTGATGCATAAGGCCCGGCGCGGTG
GCCTGCGCAGCGTTCGCCTGAGTGGCGTGCTCGCGATCCTGAACGAGCGCTTCGCCGAGCCGGATTTCTCGGCGCAGAAG
CTGGCGACGGCCGCGGGACTGTCGGAGCGCTATGTCAACGATCTGCTCTACGAGGCCGGGGCGAGCTTCTCCGCCCGGCT
CAACGAGCTCCGGCTGCGCAGGGCAATGGACCTGCTCGCCGACGGCGAGCGCCGCGTCAGCGATATCGCCTTTGCCTGCG
GCTTCAACGACCTGTCCTATTTCAACCGCTGCTTCCGCCGCCGCTTCGGGCTGACCCCCACTGCAGCGCGGGGACGTTAA

Upstream 100 bases:

>100_bases
CCGGCTTTGCCGGCCCTTGATCTTTCAGCGGCCGTTCATCCCGCCGCTGCCACATTGATCGCGTTGCTTTTGGCTTTTCA
TTTTTCCGGATCAGATTTCG

Downstream 100 bases:

>100_bases
CGGCCCGGCGGCGGTTCGACGCAACTTGTGGCCTGCCTCGCGCGTTGCCATCTCATGGCCATGCAAAACCAGAGCTCCAA
TTCCCCCCGCCGGACAGCCG

Product: AraC/XylS family transcription factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MTIVRKMLSTDMLPKALDDRQRFLCFAELFEHFSNTGELDPAEDVPFRAAMNAIHIGTTLLGRCDGTFTRVRRERRQVLA
TNDDRYCLARNAGHREAMVVHRGREFVLRPGAMVLLKLDEPFFSADGASHKRFVNVHLPMVTLRSMVPGVDDLVGRELEP
GGALSLAMDYSELLLARPTAADEAGTAVAQHLLDLVALGLGVRGEVMHKARRGGLRSVRLSGVLAILNERFAEPDFSAQK
LATAAGLSERYVNDLLYEAGASFSARLNELRLRRAMDLLADGERRVSDIAFACGFNDLSYFNRCFRRRFGLTPTAARGR

Sequences:

>Translated_319_residues
MTIVRKMLSTDMLPKALDDRQRFLCFAELFEHFSNTGELDPAEDVPFRAAMNAIHIGTTLLGRCDGTFTRVRRERRQVLA
TNDDRYCLARNAGHREAMVVHRGREFVLRPGAMVLLKLDEPFFSADGASHKRFVNVHLPMVTLRSMVPGVDDLVGRELEP
GGALSLAMDYSELLLARPTAADEAGTAVAQHLLDLVALGLGVRGEVMHKARRGGLRSVRLSGVLAILNERFAEPDFSAQK
LATAAGLSERYVNDLLYEAGASFSARLNELRLRRAMDLLADGERRVSDIAFACGFNDLSYFNRCFRRRFGLTPTAARGR
>Mature_318_residues
TIVRKMLSTDMLPKALDDRQRFLCFAELFEHFSNTGELDPAEDVPFRAAMNAIHIGTTLLGRCDGTFTRVRRERRQVLAT
NDDRYCLARNAGHREAMVVHRGREFVLRPGAMVLLKLDEPFFSADGASHKRFVNVHLPMVTLRSMVPGVDDLVGRELEPG
GALSLAMDYSELLLARPTAADEAGTAVAQHLLDLVALGLGVRGEVMHKARRGGLRSVRLSGVLAILNERFAEPDFSAQKL
ATAAGLSERYVNDLLYEAGASFSARLNELRLRRAMDLLADGERRVSDIAFACGFNDLSYFNRCFRRRFGLTPTAARGR

Specific function: Transcriptional activator of the rhizobactin regulon [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35453; Mature: 35322

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIVRKMLSTDMLPKALDDRQRFLCFAELFEHFSNTGELDPAEDVPFRAAMNAIHIGTTL
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
LGRCDGTFTRVRRERRQVLATNDDRYCLARNAGHREAMVVHRGREFVLRPGAMVLLKLDE
HHHCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHEEEECCCCEEECCCCEEEEEECC
PFFSADGASHKRFVNVHLPMVTLRSMVPGVDDLVGRELEPGGALSLAMDYSELLLARPTA
CCCCCCCCCCCEEEEEECHHHHHHHHCCCHHHHHCCCCCCCCCEEEEHHHHHHHHCCCCC
ADEAGTAVAQHLLDLVALGLGVRGEVMHKARRGGLRSVRLSGVLAILNERFAEPDFSAQK
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHH
LATAAGLSERYVNDLLYEAGASFSARLNELRLRRAMDLLADGERRVSDIAFACGFNDLSY
HHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHH
FNRCFRRRFGLTPTAARGR
HHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TIVRKMLSTDMLPKALDDRQRFLCFAELFEHFSNTGELDPAEDVPFRAAMNAIHIGTTL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
LGRCDGTFTRVRRERRQVLATNDDRYCLARNAGHREAMVVHRGREFVLRPGAMVLLKLDE
HHHCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHEEEECCCCEEECCCCEEEEEECC
PFFSADGASHKRFVNVHLPMVTLRSMVPGVDDLVGRELEPGGALSLAMDYSELLLARPTA
CCCCCCCCCCCEEEEEECHHHHHHHHCCCHHHHHCCCCCCCCCEEEEHHHHHHHHCCCCC
ADEAGTAVAQHLLDLVALGLGVRGEVMHKARRGGLRSVRLSGVLAILNERFAEPDFSAQK
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHH
LATAAGLSERYVNDLLYEAGASFSARLNELRLRRAMDLLADGERRVSDIAFACGFNDLSY
HHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHH
FNRCFRRRFGLTPTAARGR
HHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11274118; 11481432 [H]