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The map label for this gene is fliF [H]

Identifier: 146342729

GI number: 146342729

Start: 6117943

End: 6119541

Strand: Direct

Name: fliF [H]

Synonym: BRADO5899

Alternate gene names: 146342729

Gene position: 6117943-6119541 (Clockwise)

Preceding gene: 146342728

Following gene: 146342730

Centisome position: 82.05

GC content: 65.48

Gene sequence:

>1599_bases
TTGCAAGGTCTCTTGGACTTCCTGAAGGGTTTGGGCGCCGCGCGGCTCGCAGCCATGGTTGCGGTCACGGCTGCTTTGGT
CGGCTTCTTCGGCTTCGTCATCATGCGCGTGACCGCGCCGCAGATGACGACCCTGTTCACCGACCTCAGCATGGACGACT
CCTCCAGCATCATCAAGGATCTGGAGCGGCAGGGCATCGCCTTCGAGATCCGCAATGAAGGCAGCGTCATCATGGTGCCC
AAGGACAAGGTGACCCGGCTGCGCATGAAGCTCGCCGAGGGCGGCCTGCCCAAGGGCGGCGGCGTCGGCTACGAGATCTT
CGACAAGTCGGACGCGCTGGGCACCACGAGCTTCGTTCAGAACATCAACCATCTCCGGGCGCTGGAGGGCGAGCTCGCCC
GCACCATCCGCGCCATCGACCGGGTCCAGGCGGCCCGCGTCCATCTCGTTCTCCCCGAGCGGCCGCTGTTCTCGCGCGAG
ACCCCGGAGCCGTCGGCCTCGATCGTCGTGCGCGTGCGCGGCTCTCTCGAAGCCAACCAGATCCGCGCCATCCGCCACCT
CGTCGCATCAGCCGTGAACGGATTGAAGCCGCAGCGGGTGTCGATCGTCGACGAAGCCGGCCAGCTGCTCGCCGACGGCA
CGCAGACCGACATCGACCAGCAGGTCGGCGACGAACGCCGCAATGCGTTCGAGAAGCGGATGCGCAAGCAGGTCGAGGAC
ATCGTGTCCTCGGTGGTCGGATCGGGCCGCGCCCGGGTCCAGCTCTCGGCCGACTTCGACTTCAACCGCATCACCCAGAC
CTCCGACCGCTACGATCCGGAGGGCCGCGTGCTCCGGTCGAGTCAGACCCGCGAAGAGCAGTCGGCGACGTCGGAGAGCA
ATGGTCAGGTCACGGTCAACAATGAACTGCCTGGCAATCAGCAGAACCAGCAGGGCCAGCAGCCGAAGGATCAGAGCAAA
AAGACCGAAGAGACCAACAATTACGAGATTTCCCGAACCACCAAGACGGAAGTCACCGAGGCGGGACGGGTCAATCGCAT
CTCGGTCGCGGTGCTGGTCGACGGCGCCTACTCGAAGAACGAGAAGGGCGACCTGGTCTACAAGGAGCGCAGCAAGGAGG
AGCTCGATCGCATCGCAGCCCTGGTTCGCTCCGCCATCGGCTTCGACCAGAAGCGCGGCGACCAGGTCGAGGTGGTCAAC
CTGAAATTCGCCGACGGTCCGGTCGTTCCGCAGATCAGCGAGCCCACCGGCTTCCTCGGCATGCTGCACTTCACCAAGGA
CGACGTGATGTACGTCATCGAGCTCGCCGTGATGATGCTGCTCGGCATCGTCGTGGTGTTCATGGTGGTGCGGCCGCTGG
TGAAGAAGATCATCTCGACCGAGGAGATCGCTGCCGCCAACGCCGTTCCGGCGATCACCGACGAAACCGCGCAAGCGCAG
GCCCACGCCCAGCAGACCGCCCAGTTGATCGACGTCGCCCAGGTCCAGGGCCAGGTCCACGCCCAGTCCGTCCACCGCGT
GGGCGAGCTGGCCGACCGCAATCCGGGCGAGGCCGCCGCCATCATCCGCCAGTGGCTCGCCGAGCCGCAGCAGAGCTGA

Upstream 100 bases:

>100_bases
TAAGGATTGAATTTCGCGATCTCTGCAACCGGCCGTAAAGGCCCGCGAAGCTCAAATCACCTTTCAGCAGCCACCCGTCG
CCGAACTATGGGGCAGTTGC

Downstream 100 bases:

>100_bases
TCCTTCGACGTGAACCATCTGAAGTGAAAAGAACGTAGATCGCCATGTCGCTTCCGCAAACGCAGAACGCCAACGCCAAC
GACATCTCCACCGTCATCGC

Product: flagellar MS-ring protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 532; Mature: 532

Protein sequence:

>532_residues
MQGLLDFLKGLGAARLAAMVAVTAALVGFFGFVIMRVTAPQMTTLFTDLSMDDSSSIIKDLERQGIAFEIRNEGSVIMVP
KDKVTRLRMKLAEGGLPKGGGVGYEIFDKSDALGTTSFVQNINHLRALEGELARTIRAIDRVQAARVHLVLPERPLFSRE
TPEPSASIVVRVRGSLEANQIRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGTQTDIDQQVGDERRNAFEKRMRKQVED
IVSSVVGSGRARVQLSADFDFNRITQTSDRYDPEGRVLRSSQTREEQSATSESNGQVTVNNELPGNQQNQQGQQPKDQSK
KTEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGAYSKNEKGDLVYKERSKEELDRIAALVRSAIGFDQKRGDQVEVVN
LKFADGPVVPQISEPTGFLGMLHFTKDDVMYVIELAVMMLLGIVVVFMVVRPLVKKIISTEEIAAANAVPAITDETAQAQ
AHAQQTAQLIDVAQVQGQVHAQSVHRVGELADRNPGEAAAIIRQWLAEPQQS

Sequences:

>Translated_532_residues
MQGLLDFLKGLGAARLAAMVAVTAALVGFFGFVIMRVTAPQMTTLFTDLSMDDSSSIIKDLERQGIAFEIRNEGSVIMVP
KDKVTRLRMKLAEGGLPKGGGVGYEIFDKSDALGTTSFVQNINHLRALEGELARTIRAIDRVQAARVHLVLPERPLFSRE
TPEPSASIVVRVRGSLEANQIRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGTQTDIDQQVGDERRNAFEKRMRKQVED
IVSSVVGSGRARVQLSADFDFNRITQTSDRYDPEGRVLRSSQTREEQSATSESNGQVTVNNELPGNQQNQQGQQPKDQSK
KTEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGAYSKNEKGDLVYKERSKEELDRIAALVRSAIGFDQKRGDQVEVVN
LKFADGPVVPQISEPTGFLGMLHFTKDDVMYVIELAVMMLLGIVVVFMVVRPLVKKIISTEEIAAANAVPAITDETAQAQ
AHAQQTAQLIDVAQVQGQVHAQSVHRVGELADRNPGEAAAIIRQWLAEPQQS
>Mature_532_residues
MQGLLDFLKGLGAARLAAMVAVTAALVGFFGFVIMRVTAPQMTTLFTDLSMDDSSSIIKDLERQGIAFEIRNEGSVIMVP
KDKVTRLRMKLAEGGLPKGGGVGYEIFDKSDALGTTSFVQNINHLRALEGELARTIRAIDRVQAARVHLVLPERPLFSRE
TPEPSASIVVRVRGSLEANQIRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGTQTDIDQQVGDERRNAFEKRMRKQVED
IVSSVVGSGRARVQLSADFDFNRITQTSDRYDPEGRVLRSSQTREEQSATSESNGQVTVNNELPGNQQNQQGQQPKDQSK
KTEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGAYSKNEKGDLVYKERSKEELDRIAALVRSAIGFDQKRGDQVEVVN
LKFADGPVVPQISEPTGFLGMLHFTKDDVMYVIELAVMMLLGIVVVFMVVRPLVKKIISTEEIAAANAVPAITDETAQAQ
AHAQQTAQLIDVAQVQGQVHAQSVHRVGELADRNPGEAAAIIRQWLAEPQQS

Specific function: The M ring may be actively involved in energy transduction [H]

COG id: COG1766

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliF family [H]

Homologues:

Organism=Escherichia coli, GI1788248, Length=563, Percent_Identity=33.392539964476, Blast_Score=239, Evalue=3e-64,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013556
- InterPro:   IPR000067
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]

EC number: NA

Molecular weight: Translated: 58303; Mature: 58303

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGLLDFLKGLGAARLAAMVAVTAALVGFFGFVIMRVTAPQMTTLFTDLSMDDSSSIIKD
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHH
LERQGIAFEIRNEGSVIMVPKDKVTRLRMKLAEGGLPKGGGVGYEIFDKSDALGTTSFVQ
HHHCCCEEEEECCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHH
NINHLRALEGELARTIRAIDRVQAARVHLVLPERPLFSRETPEPSASIVVRVRGSLEANQ
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHH
IRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGTQTDIDQQVGDERRNAFEKRMRKQVED
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IVSSVVGSGRARVQLSADFDFNRITQTSDRYDPEGRVLRSSQTREEQSATSESNGQVTVN
HHHHHHCCCCEEEEEECCCCHHHHCCCCCCCCCCCCEECCCHHHHHHHCCCCCCCEEEEC
NELPGNQQNQQGQQPKDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGAYSKN
CCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHCCCCCEEEEEEEEECCCCCC
EKGDLVYKERSKEELDRIAALVRSAIGFDQKRGDQVEVVNLKFADGPVVPQISEPTGFLG
CCCCEEEHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEE
MLHFTKDDVMYVIELAVMMLLGIVVVFMVVRPLVKKIISTEEIAAANAVPAITDETAQAQ
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCHHHHHH
AHAQQTAQLIDVAQVQGQVHAQSVHRVGELADRNPGEAAAIIRQWLAEPQQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQGLLDFLKGLGAARLAAMVAVTAALVGFFGFVIMRVTAPQMTTLFTDLSMDDSSSIIKD
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHH
LERQGIAFEIRNEGSVIMVPKDKVTRLRMKLAEGGLPKGGGVGYEIFDKSDALGTTSFVQ
HHHCCCEEEEECCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHH
NINHLRALEGELARTIRAIDRVQAARVHLVLPERPLFSRETPEPSASIVVRVRGSLEANQ
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHH
IRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGTQTDIDQQVGDERRNAFEKRMRKQVED
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IVSSVVGSGRARVQLSADFDFNRITQTSDRYDPEGRVLRSSQTREEQSATSESNGQVTVN
HHHHHHCCCCEEEEEECCCCHHHHCCCCCCCCCCCCEECCCHHHHHHHCCCCCCCEEEEC
NELPGNQQNQQGQQPKDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGAYSKN
CCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHCCCCCEEEEEEEEECCCCCC
EKGDLVYKERSKEELDRIAALVRSAIGFDQKRGDQVEVVNLKFADGPVVPQISEPTGFLG
CCCCEEEHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEE
MLHFTKDDVMYVIELAVMMLLGIVVVFMVVRPLVKKIISTEEIAAANAVPAITDETAQAQ
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCHHHHHH
AHAQQTAQLIDVAQVQGQVHAQSVHRVGELADRNPGEAAAIIRQWLAEPQQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8002583; 11259647 [H]