Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
---|---|
Accession | NC_009445 |
Length | 7,456,587 |
Click here to switch to the map view.
The map label for this gene is aegA [H]
Identifier: 146342635
GI number: 146342635
Start: 6000623
End: 6002422
Strand: Direct
Name: aegA [H]
Synonym: BRADO5800
Alternate gene names: 146342635
Gene position: 6000623-6002422 (Clockwise)
Preceding gene: 146342634
Following gene: 146342636
Centisome position: 80.47
GC content: 63.61
Gene sequence:
>1800_bases ATGAGAGCGACTGATATCTCGGCCCCCGACTACTTCCACAAAGTGGTCGATTGCCAATGGGCTTGTCCCGCACACACGCC GGTCCCCGAATACATCCGACTGATCGCCGAGGGTCGCTACAGCGACGCCTACATGATCAATTGGAAGTCGAACGTGTTTC CCGGCATCCTCGGACGCACCTGCGATCGCCCGTGCGAGCCCGCCTGCCGACGCGGACGCGTCGAGGAGAGCCCGGTGGCG ATCTGCCGGCTGAAGCGCGTCGCCGCCGACTTCAAGGACGACGTGCAGCAGCGCATGCCGCGGCCGGTCGCGAAGAACGG TTGCCGCATCGCGCTGGTCGGCGGCGGTCCGGCGTCGCTGACTGTCGCGCGCGACCTCGCGCCGCTCGGTTATCATTGTA CGGTGTTCGACGCCGATCCCAAGCCGGGCGGCATGATGCGCTCGCAGATTCCCAAATTTCGCCTGCCCGACAGCGTGATC GACGAAGAGACGGGCTACGTGCTCAGCCTCGGCGTCGACTACAAGGCCGGCCATCGCATCGACAGCCTCAAGGCGCTGCT GTCCGACAATTACGACGCCGTGTTCATCGGCTCCGGCGCTCCGCGCGGCCGCGAGCTGAACATTCCCGGCCGCAAGGAAG CCGCAGGAAATATCCATCTCGGCATCGATTGGCTCTCCAGCGTCTCCTTCGGTCACACCGACAAGATCGGCAAGCGCGTG ATCGTGCTCGGCGGCGGCAACACCGCAATGGATTGCTGCCGTACCGCGCGCCGGCTCGGCGGCGAGGACGTGAAGGTCAT CGTCCGCTCCGGCTTCGAGGAGATGAAGGCGTCTCCTTGGGAGAAAGAGGACGCGCTGCATGAAGATATCCCGATCCTCA ACTATCTCGTGCCGGTCGCCTTCAAACACGACAATGGCACGCTCACAGGCGTCACCTTCCAGAAGGTGAAGGCCGAGTAT GACGACAAGGGCCGCCGCTCGCTGGTGCCGTCAGGCGAGCCCGACGTGACCTATGACTGCGACGACGTGCTGGTCGCGGT CGGCCAGGAGAATGCCTTCCCCTGGATCGAAGCCGATTGCGGCATCACCTTCGACAAATGGCACATGCCCGTGGTCGATC CGAAAACCTTCGTCTCGACCAACCCAAAAGTGTTCTTCGGCGGCGACGCCGCGTTCGGCCCGAAGAACATCATCTGGGCG GTTGCGCAGGGCCACGAAGCGGCACTGTCGATCCATCGGCTGCTATCCGGCGAGGACGTCACCGAGCGGCCGCTGCCGGA GGTGCATGTCTCCTCGCAGAAGATGGGCATCCACGAATGGAGCTATGACAACGACATCTCGCCGGAGAAGCGCTTCAAGG TGCCGCATCGCGACAAGGTGGTGGCGCTGAAGGACATCCGCACCGAGGTCGAGCTCGGCTATGACGTCAAGCTGGCGCTC GGTGAGGCGCATCGTTGCCTGAACTGCGACGTGCAGACGGTGTTCTCCAACACGCTGTGCATCGAATGCGACGCCTGCGC CGACATCTGCCCGATGGACTGCATCACCTTCACCGAGAATGGCGAGGAGGCCGATCTCAGGTCGCGGCTCAAGGCGCCGT CAGTTCATCCCGACCAGAGCCTCTACGTGTCCTCGGACCTCAAGACCGGGCGCGTGATGGTGAAGGACGAGGACGTCTGC CTCCATTGCGGCCTGTGCGCCGAACGCTGCCCCACAGGTGCGTGGGACATGCAGAAATACTTCATCGAGACGACTCACGC AGGTACCGCATGTCCCAGCAAGCGCCGCTCAGCAGCGTAA
Upstream 100 bases:
>100_bases TGCTCCGGACCTCAACCGATCCTCTGCTGATCCTGAATATCAGTCGTCCTCACGTCAGGAAGGCCGCGCGAAACTGGTTC GCCGCGCGGACAGGGTAGGA
Downstream 100 bases:
>100_bases ACGACTTCGTCGTCCGCTTCGCCAACGTCAACGGCTCCGGCTCGGCCAGCGCCAACGAGCTGTTCGCGCGCGCCGTGCTC CGCCACGGCGTGCCGGTGAG
Product: putative glutamate synthase (NADPH) 2-ketoglutarate NADP oxidoreductase subunit gamma (korC-like)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 599; Mature: 599
Protein sequence:
>599_residues MRATDISAPDYFHKVVDCQWACPAHTPVPEYIRLIAEGRYSDAYMINWKSNVFPGILGRTCDRPCEPACRRGRVEESPVA ICRLKRVAADFKDDVQQRMPRPVAKNGCRIALVGGGPASLTVARDLAPLGYHCTVFDADPKPGGMMRSQIPKFRLPDSVI DEETGYVLSLGVDYKAGHRIDSLKALLSDNYDAVFIGSGAPRGRELNIPGRKEAAGNIHLGIDWLSSVSFGHTDKIGKRV IVLGGGNTAMDCCRTARRLGGEDVKVIVRSGFEEMKASPWEKEDALHEDIPILNYLVPVAFKHDNGTLTGVTFQKVKAEY DDKGRRSLVPSGEPDVTYDCDDVLVAVGQENAFPWIEADCGITFDKWHMPVVDPKTFVSTNPKVFFGGDAAFGPKNIIWA VAQGHEAALSIHRLLSGEDVTERPLPEVHVSSQKMGIHEWSYDNDISPEKRFKVPHRDKVVALKDIRTEVELGYDVKLAL GEAHRCLNCDVQTVFSNTLCIECDACADICPMDCITFTENGEEADLRSRLKAPSVHPDQSLYVSSDLKTGRVMVKDEDVC LHCGLCAERCPTGAWDMQKYFIETTHAGTACPSKRRSAA
Sequences:
>Translated_599_residues MRATDISAPDYFHKVVDCQWACPAHTPVPEYIRLIAEGRYSDAYMINWKSNVFPGILGRTCDRPCEPACRRGRVEESPVA ICRLKRVAADFKDDVQQRMPRPVAKNGCRIALVGGGPASLTVARDLAPLGYHCTVFDADPKPGGMMRSQIPKFRLPDSVI DEETGYVLSLGVDYKAGHRIDSLKALLSDNYDAVFIGSGAPRGRELNIPGRKEAAGNIHLGIDWLSSVSFGHTDKIGKRV IVLGGGNTAMDCCRTARRLGGEDVKVIVRSGFEEMKASPWEKEDALHEDIPILNYLVPVAFKHDNGTLTGVTFQKVKAEY DDKGRRSLVPSGEPDVTYDCDDVLVAVGQENAFPWIEADCGITFDKWHMPVVDPKTFVSTNPKVFFGGDAAFGPKNIIWA VAQGHEAALSIHRLLSGEDVTERPLPEVHVSSQKMGIHEWSYDNDISPEKRFKVPHRDKVVALKDIRTEVELGYDVKLAL GEAHRCLNCDVQTVFSNTLCIECDACADICPMDCITFTENGEEADLRSRLKAPSVHPDQSLYVSSDLKTGRVMVKDEDVC LHCGLCAERCPTGAWDMQKYFIETTHAGTACPSKRRSAA >Mature_599_residues MRATDISAPDYFHKVVDCQWACPAHTPVPEYIRLIAEGRYSDAYMINWKSNVFPGILGRTCDRPCEPACRRGRVEESPVA ICRLKRVAADFKDDVQQRMPRPVAKNGCRIALVGGGPASLTVARDLAPLGYHCTVFDADPKPGGMMRSQIPKFRLPDSVI DEETGYVLSLGVDYKAGHRIDSLKALLSDNYDAVFIGSGAPRGRELNIPGRKEAAGNIHLGIDWLSSVSFGHTDKIGKRV IVLGGGNTAMDCCRTARRLGGEDVKVIVRSGFEEMKASPWEKEDALHEDIPILNYLVPVAFKHDNGTLTGVTFQKVKAEY DDKGRRSLVPSGEPDVTYDCDDVLVAVGQENAFPWIEADCGITFDKWHMPVVDPKTFVSTNPKVFFGGDAAFGPKNIIWA VAQGHEAALSIHRLLSGEDVTERPLPEVHVSSQKMGIHEWSYDNDISPEKRFKVPHRDKVVALKDIRTEVELGYDVKLAL GEAHRCLNCDVQTVFSNTLCIECDACADICPMDCITFTENGEEADLRSRLKAPSVHPDQSLYVSSDLKTGRVMVKDEDVC LHCGLCAERCPTGAWDMQKYFIETTHAGTACPSKRRSAA
Specific function: Unknown
COG id: COG0493
COG function: function code ER; NADPH-dependent glutamate synthase beta chain and related oxidoreductases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 4 4Fe-4S ferredoxin-type domains [H]
Homologues:
Organism=Homo sapiens, GI119943098, Length=442, Percent_Identity=29.8642533936652, Blast_Score=159, Evalue=9e-39, Organism=Escherichia coli, GI1788811, Length=422, Percent_Identity=32.9383886255924, Blast_Score=193, Evalue=3e-50, Organism=Escherichia coli, GI87082180, Length=432, Percent_Identity=32.1759259259259, Blast_Score=181, Evalue=1e-46, Organism=Escherichia coli, GI1789243, Length=584, Percent_Identity=28.9383561643836, Blast_Score=180, Evalue=3e-46, Organism=Escherichia coli, GI1789606, Length=421, Percent_Identity=30.8788598574822, Blast_Score=171, Evalue=9e-44, Organism=Escherichia coli, GI1788468, Length=409, Percent_Identity=28.8508557457213, Blast_Score=171, Evalue=1e-43, Organism=Caenorhabditis elegans, GI17570289, Length=438, Percent_Identity=26.2557077625571, Blast_Score=141, Evalue=1e-33, Organism=Caenorhabditis elegans, GI71984108, Length=442, Percent_Identity=29.6380090497738, Blast_Score=134, Evalue=9e-32, Organism=Saccharomyces cerevisiae, GI6320030, Length=430, Percent_Identity=25.1162790697674, Blast_Score=121, Evalue=3e-28, Organism=Drosophila melanogaster, GI24640763, Length=423, Percent_Identity=30.0236406619385, Blast_Score=152, Evalue=8e-37, Organism=Drosophila melanogaster, GI18858217, Length=423, Percent_Identity=30.0236406619385, Blast_Score=152, Evalue=8e-37, Organism=Drosophila melanogaster, GI24665547, Length=423, Percent_Identity=25.531914893617, Blast_Score=141, Evalue=1e-33, Organism=Drosophila melanogaster, GI24665543, Length=423, Percent_Identity=25.531914893617, Blast_Score=141, Evalue=1e-33, Organism=Drosophila melanogaster, GI28574881, Length=423, Percent_Identity=25.531914893617, Blast_Score=141, Evalue=2e-33, Organism=Drosophila melanogaster, GI24665539, Length=423, Percent_Identity=25.531914893617, Blast_Score=141, Evalue=2e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001450 - InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR013027 - InterPro: IPR012285 - InterPro: IPR006006 [H]
Pfam domain/function: PF00037 Fer4; PF07992 Pyr_redox_2 [H]
EC number: NA
Molecular weight: Translated: 66084; Mature: 66084
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 4.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRATDISAPDYFHKVVDCQWACPAHTPVPEYIRLIAEGRYSDAYMINWKSNVFPGILGRT CCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHCC CDRPCEPACRRGRVEESPVAICRLKRVAADFKDDVQQRMPRPVAKNGCRIALVGGGPASL CCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCEEEEECCCCCEE TVARDLAPLGYHCTVFDADPKPGGMMRSQIPKFRLPDSVIDEETGYVLSLGVDYKAGHRI EEEHHCCCCCEEEEEEECCCCCCCCHHHCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCH DSLKALLSDNYDAVFIGSGAPRGRELNIPGRKEAAGNIHLGIDWLSSVSFGHTDKIGKRV HHHHHHHCCCCCEEEECCCCCCCCEECCCCCCCCCCEEEEEEHHHHCCCCCCCCCCCCEE IVLGGGNTAMDCCRTARRLGGEDVKVIVRSGFEEMKASPWEKEDALHEDIPILNYLVPVA EEEECCCHHHHHHHHHHHCCCCCEEHHHHCCHHHHHCCCCCHHHHHHHCCCHHHHHEEEE FKHDNGTLTGVTFQKVKAEYDDKGRRSLVPSGEPDVTYDCDDVLVAVGQENAFPWIEADC EECCCCEEEEEEHEEHHCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCEEECCC GITFDKWHMPVVDPKTFVSTNPKVFFGGDAAFGPKNIIWAVAQGHEAALSIHRLLSGEDV CEEECCCCCCCCCCHHHCCCCCEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCC TERPLPEVHVSSQKMGIHEWSYDNDISPEKRFKVPHRDKVVALKDIRTEVELGYDVKLAL CCCCCCCEEECCCCCCCEECCCCCCCCHHHHCCCCCCCCEEEEEHHHHHHHCCCEEEEEE GEAHRCLNCDVQTVFSNTLCIECDACADICPMDCITFTENGEEADLRSRLKAPSVHPDQS CCCCHHCCCCHHHHHCCEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCC LYVSSDLKTGRVMVKDEDVCLHCGLCAERCPTGAWDMQKYFIETTHAGTACPSKRRSAA EEEECCCCCCEEEEECCCEEEECCCHHHHCCCCCHHHHHHHEEECCCCCCCCCHHCCCC >Mature Secondary Structure MRATDISAPDYFHKVVDCQWACPAHTPVPEYIRLIAEGRYSDAYMINWKSNVFPGILGRT CCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHCC CDRPCEPACRRGRVEESPVAICRLKRVAADFKDDVQQRMPRPVAKNGCRIALVGGGPASL CCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCEEEEECCCCCEE TVARDLAPLGYHCTVFDADPKPGGMMRSQIPKFRLPDSVIDEETGYVLSLGVDYKAGHRI EEEHHCCCCCEEEEEEECCCCCCCCHHHCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCH DSLKALLSDNYDAVFIGSGAPRGRELNIPGRKEAAGNIHLGIDWLSSVSFGHTDKIGKRV HHHHHHHCCCCCEEEECCCCCCCCEECCCCCCCCCCEEEEEEHHHHCCCCCCCCCCCCEE IVLGGGNTAMDCCRTARRLGGEDVKVIVRSGFEEMKASPWEKEDALHEDIPILNYLVPVA EEEECCCHHHHHHHHHHHCCCCCEEHHHHCCHHHHHCCCCCHHHHHHHCCCHHHHHEEEE FKHDNGTLTGVTFQKVKAEYDDKGRRSLVPSGEPDVTYDCDDVLVAVGQENAFPWIEADC EECCCCEEEEEEHEEHHCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCEEECCC GITFDKWHMPVVDPKTFVSTNPKVFFGGDAAFGPKNIIWAVAQGHEAALSIHRLLSGEDV CEEECCCCCCCCCCHHHCCCCCEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCC TERPLPEVHVSSQKMGIHEWSYDNDISPEKRFKVPHRDKVVALKDIRTEVELGYDVKLAL CCCCCCCEEECCCCCCCEECCCCCCCCHHHHCCCCCCCCEEEEEHHHHHHHCCCEEEEEE GEAHRCLNCDVQTVFSNTLCIECDACADICPMDCITFTENGEEADLRSRLKAPSVHPDQS CCCCHHCCCCHHHHHCCEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCC LYVSSDLKTGRVMVKDEDVCLHCGLCAERCPTGAWDMQKYFIETTHAGTACPSKRRSAA EEEECCCCCCEEEEECCCEEEECCCHHHHCCCCCHHHHHHHEEECCCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8955321; 9205837; 9278503 [H]