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The map label for this gene is yeaM [H]

Identifier: 146342616

GI number: 146342616

Start: 5983235

End: 5984038

Strand: Direct

Name: yeaM [H]

Synonym: BRADO5780

Alternate gene names: 146342616

Gene position: 5983235-5984038 (Clockwise)

Preceding gene: 146342613

Following gene: 146342617

Centisome position: 80.24

GC content: 70.77

Gene sequence:

>804_bases
ATGACCATCGTGGACACGCCATTGAAGCCGCTCGGCGCCGACCGGGTGACGACCGAGCCCGGCGTGCATCTGATCGCACG
CAGCTACCACAAGGGCAGCCGGCTCGAGCCGCACATGCACCGGGAGTCGCAGCTGATCTACGCCTCCGCCGGTACGATGC
AGGTGACGACGCCGCAAGGCCGCTGGCTGGTGCCGCCGGATCGCGCCGTCTGGGTGCCGGCGCGGCATGCGCATGCCATC
GACATGCTGGCCGACAGCGCAATGCGGACACTTTATTTCGAGCTCGACTGGCTCGCCCGCGAGGCGCGCGGTCTCAGGCT
CGATCGCGAATTCGTGGTGCAGGTCTCGCCGCTGCTGCATCAGGCGATCCTCGCCCTGTTCGACGCCACCGGCGGACCCG
AGCGCACCGCCCTGCTGGTGCGGCTCGCTCTGCTCGAGTTGCGCCGCGCCGAGGATTCCTCGACCTTCATCCCGCTGCCG
CAGGACCCGCGCGCCCGACGCGCCGCGCTGCTCGTGCTCGCCTCTCCCGCGCGCGAGCAGGATCTCGCGACCCTGGCGGG
CAGCGTCGGCAGCTCCGCCCGCACCTTGTCGCGGCTGTTCGCGGCGGAGACCCGGCTGAGCTTCAAGGCGTGGTGCCAGC
GCGCCCGGATCGCCGCGGCGATCGAGCGGCTGTCGACGGACCGTCATCTGTCGGTCAAGCAGCTCGCCGCCGATCTCGGC
TATGCCAGTGTCCCGGCGTTCTCGCACGCCTTCCGGCAGGTGACCGGCCGCACGCCGACCGAATTCGCCGGTCAGAGCGA
GTGA

Upstream 100 bases:

>100_bases
ATGACGCGGCTTGGTCTGTTCCGGCTTGGGCTGTTCATGAGCGTGTCCTCGATTCCCGGATAAATCGGTTATACTGGCTC
GCCCCAACGAGAAGCCGCCA

Downstream 100 bases:

>100_bases
CATCGCAGCCCTGCATGCAGGCGCCGCCGACGGCGTTGACGTTTTGTTATGGTTGAATGTCGCCACCTTTGCCATAAATC
CATGTAACATCGCAGCCATC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MTIVDTPLKPLGADRVTTEPGVHLIARSYHKGSRLEPHMHRESQLIYASAGTMQVTTPQGRWLVPPDRAVWVPARHAHAI
DMLADSAMRTLYFELDWLAREARGLRLDREFVVQVSPLLHQAILALFDATGGPERTALLVRLALLELRRAEDSSTFIPLP
QDPRARRAALLVLASPAREQDLATLAGSVGSSARTLSRLFAAETRLSFKAWCQRARIAAAIERLSTDRHLSVKQLAADLG
YASVPAFSHAFRQVTGRTPTEFAGQSE

Sequences:

>Translated_267_residues
MTIVDTPLKPLGADRVTTEPGVHLIARSYHKGSRLEPHMHRESQLIYASAGTMQVTTPQGRWLVPPDRAVWVPARHAHAI
DMLADSAMRTLYFELDWLAREARGLRLDREFVVQVSPLLHQAILALFDATGGPERTALLVRLALLELRRAEDSSTFIPLP
QDPRARRAALLVLASPAREQDLATLAGSVGSSARTLSRLFAAETRLSFKAWCQRARIAAAIERLSTDRHLSVKQLAADLG
YASVPAFSHAFRQVTGRTPTEFAGQSE
>Mature_266_residues
TIVDTPLKPLGADRVTTEPGVHLIARSYHKGSRLEPHMHRESQLIYASAGTMQVTTPQGRWLVPPDRAVWVPARHAHAID
MLADSAMRTLYFELDWLAREARGLRLDREFVVQVSPLLHQAILALFDATGGPERTALLVRLALLELRRAEDSSTFIPLPQ
DPRARRAALLVLASPAREQDLATLAGSVGSSARTLSRLFAAETRLSFKAWCQRARIAAAIERLSTDRHLSVKQLAADLGY
ASVPAFSHAFRQVTGRTPTEFAGQSE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=228, Percent_Identity=28.9473684210526, Blast_Score=92, Evalue=5e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29483; Mature: 29352

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIVDTPLKPLGADRVTTEPGVHLIARSYHKGSRLEPHMHRESQLIYASAGTMQVTTPQG
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEECCCC
RWLVPPDRAVWVPARHAHAIDMLADSAMRTLYFELDWLAREARGLRLDREFVVQVSPLLH
CEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
QAILALFDATGGPERTALLVRLALLELRRAEDSSTFIPLPQDPRARRAALLVLASPAREQ
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHEEEEEEECCCCHH
DLATLAGSVGSSARTLSRLFAAETRLSFKAWCQRARIAAAIERLSTDRHLSVKQLAADLG
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
YASVPAFSHAFRQVTGRTPTEFAGQSE
CCCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TIVDTPLKPLGADRVTTEPGVHLIARSYHKGSRLEPHMHRESQLIYASAGTMQVTTPQG
CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEECCCC
RWLVPPDRAVWVPARHAHAIDMLADSAMRTLYFELDWLAREARGLRLDREFVVQVSPLLH
CEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
QAILALFDATGGPERTALLVRLALLELRRAEDSSTFIPLPQDPRARRAALLVLASPAREQ
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHEEEEEEECCCCHH
DLATLAGSVGSSARTLSRLFAAETRLSFKAWCQRARIAAAIERLSTDRHLSVKQLAADLG
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
YASVPAFSHAFRQVTGRTPTEFAGQSE
CCCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]