| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is phnL [H]
Identifier: 146342199
GI number: 146342199
Start: 5559752
End: 5560465
Strand: Reverse
Name: phnL [H]
Synonym: BRADO5351
Alternate gene names: 146342199
Gene position: 5560465-5559752 (Counterclockwise)
Preceding gene: 146342200
Following gene: 146342198
Centisome position: 74.57
GC content: 68.21
Gene sequence:
>714_bases ATGAGCCCGATGACCATGACCGTGATGCTCGACGTCGACAATGCCCGGAAGACCTTCACCATGCACCTGCAGGGCGGCAT CTCGCTGCCGGTGGTGCAGGGCGTCTCGTTCCAGGTCGCGGCCGGCGAATGCGTCGTGCTGTCCGGCCCGTCGGGGGCGG GCAAGTCGTCGATCCTGAAGATGATCTTCGGCAACTATCGCTGCGACGGCGGCCGCATCAGCGTCCGTCACCAGGGCGAG ATGACAAATCTCGCCGGCGCCGAGCCGCGCCTGGTGCTCGACGCGCGGCGGCACACGATCGGCTATGTCAGCCAGTTTCT GCGTGCGGTGCCGCGCGTGGCGGCGCTGGATGTCGTCGCCGAGCCGCTGCTGGCGGCCGGCGGGACACGCGAGGAGGCAC GCGCGCGCGCCGGCGCGTTGCTGGCCCTGCTGAACATTCCGGAGCGGCTATGGTCGTTGCCGCCGTCGACGTTCTCCGGC GGCGAGCAGCAGCGTGTCAACATCGCGCGCGGCTTCATCTCCGACCTGCCGATCCTGCTGCTGGACGAGCCGACGGCCTC GCTCGATGCGGCGAACCGGGCCGTGGTGGTCGATCTCATCGCCGCAAAGAAGCAGGCCGGCGTCGCGATGATTGCGATCG TGCACGACGATGATATTCGTGCTGCCATCGCGGACCGCACGGTGGATGTGACGAATTTCGCAGCGGCGGCGTAG
Upstream 100 bases:
>100_bases TGAAGGAGGGGCGGGTGATCGAGACCGGCCTGACCGACCAGGTGCTCGATGATCCGCGAGAGCCCTACACACAGCTTCTC GTCTCCTCGATCCTGCCGCC
Downstream 100 bases:
>100_bases CAGGCAGAGGGAGCAGATGAGCGCGAACATGTCCGACACCGTGATAGGCAACGCCCGGCTGGTGCTCGCCGACCGTGTCA TCGAGCAGGGGTGGGTGGCG
Product: putative phosphonate ABC transporter ATP-binding component, PhnL protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 237; Mature: 236
Protein sequence:
>237_residues MSPMTMTVMLDVDNARKTFTMHLQGGISLPVVQGVSFQVAAGECVVLSGPSGAGKSSILKMIFGNYRCDGGRISVRHQGE MTNLAGAEPRLVLDARRHTIGYVSQFLRAVPRVAALDVVAEPLLAAGGTREEARARAGALLALLNIPERLWSLPPSTFSG GEQQRVNIARGFISDLPILLLDEPTASLDAANRAVVVDLIAAKKQAGVAMIAIVHDDDIRAAIADRTVDVTNFAAAA
Sequences:
>Translated_237_residues MSPMTMTVMLDVDNARKTFTMHLQGGISLPVVQGVSFQVAAGECVVLSGPSGAGKSSILKMIFGNYRCDGGRISVRHQGE MTNLAGAEPRLVLDARRHTIGYVSQFLRAVPRVAALDVVAEPLLAAGGTREEARARAGALLALLNIPERLWSLPPSTFSG GEQQRVNIARGFISDLPILLLDEPTASLDAANRAVVVDLIAAKKQAGVAMIAIVHDDDIRAAIADRTVDVTNFAAAA >Mature_236_residues SPMTMTVMLDVDNARKTFTMHLQGGISLPVVQGVSFQVAAGECVVLSGPSGAGKSSILKMIFGNYRCDGGRISVRHQGEM TNLAGAEPRLVLDARRHTIGYVSQFLRAVPRVAALDVVAEPLLAAGGTREEARARAGALLALLNIPERLWSLPPSTFSGG EQQRVNIARGFISDLPILLLDEPTASLDAANRAVVVDLIAAKKQAGVAMIAIVHDDDIRAAIADRTVDVTNFAAAA
Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]
COG id: COG4778
COG function: function code P; ABC-type phosphonate transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42490749, Length=213, Percent_Identity=31.924882629108, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI9955963, Length=193, Percent_Identity=34.7150259067358, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI9961252, Length=198, Percent_Identity=27.7777777777778, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI9961250, Length=198, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=9e-12, Organism=Homo sapiens, GI4505771, Length=198, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI46592956, Length=190, Percent_Identity=31.5789473684211, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI46592964, Length=190, Percent_Identity=31.5789473684211, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI46592971, Length=190, Percent_Identity=31.5789473684211, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI46592978, Length=190, Percent_Identity=31.5789473684211, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI46592915, Length=190, Percent_Identity=31.5789473684211, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI105990541, Length=212, Percent_Identity=27.3584905660377, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI46592898, Length=190, Percent_Identity=31.5789473684211, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI255708477, Length=201, Percent_Identity=26.3681592039801, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1790534, Length=218, Percent_Identity=55.9633027522936, Blast_Score=252, Evalue=1e-68, Organism=Escherichia coli, GI1786703, Length=210, Percent_Identity=35.2380952380952, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI87081834, Length=210, Percent_Identity=32.3809523809524, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1787029, Length=221, Percent_Identity=32.1266968325792, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1788225, Length=224, Percent_Identity=32.1428571428571, Blast_Score=95, Evalue=3e-21, Organism=Escherichia coli, GI1787105, Length=225, Percent_Identity=30.2222222222222, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI1789873, Length=185, Percent_Identity=35.1351351351351, Blast_Score=94, Evalue=6e-21, Organism=Escherichia coli, GI1786398, Length=225, Percent_Identity=30.6666666666667, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1787500, Length=228, Percent_Identity=28.5087719298246, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1789672, Length=221, Percent_Identity=28.5067873303167, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1787712, Length=231, Percent_Identity=29.4372294372294, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1789962, Length=199, Percent_Identity=30.6532663316583, Blast_Score=85, Evalue=3e-18, Organism=Escherichia coli, GI1787089, Length=212, Percent_Identity=30.6603773584906, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1790544, Length=234, Percent_Identity=29.4871794871795, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1790467, Length=199, Percent_Identity=29.6482412060301, Blast_Score=80, Evalue=8e-17, Organism=Escherichia coli, GI48994997, Length=196, Percent_Identity=32.1428571428571, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1789991, Length=229, Percent_Identity=29.6943231441048, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI48995001, Length=205, Percent_Identity=31.219512195122, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1788450, Length=200, Percent_Identity=31.5, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI87081709, Length=230, Percent_Identity=30, Blast_Score=77, Evalue=7e-16, Organism=Escherichia coli, GI1787758, Length=198, Percent_Identity=27.2727272727273, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787370, Length=199, Percent_Identity=29.6482412060301, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI145693107, Length=200, Percent_Identity=31, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788644, Length=214, Percent_Identity=30.8411214953271, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786319, Length=213, Percent_Identity=28.6384976525822, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1789891, Length=207, Percent_Identity=30.9178743961353, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1788761, Length=225, Percent_Identity=27.1111111111111, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1789032, Length=247, Percent_Identity=29.1497975708502, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI87082267, Length=199, Percent_Identity=27.1356783919598, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789593, Length=196, Percent_Identity=31.1224489795918, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1786253, Length=198, Percent_Identity=28.7878787878788, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786975, Length=211, Percent_Identity=27.9620853080569, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1788506, Length=210, Percent_Identity=30.4761904761905, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1786872, Length=187, Percent_Identity=31.0160427807487, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI87081791, Length=222, Percent_Identity=26.1261261261261, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1786698, Length=191, Percent_Identity=26.7015706806283, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1788165, Length=209, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787182, Length=177, Percent_Identity=27.683615819209, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787759, Length=220, Percent_Identity=32.2727272727273, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI48994883, Length=226, Percent_Identity=27.8761061946903, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1787164, Length=199, Percent_Identity=31.6582914572864, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786563, Length=192, Percent_Identity=29.6875, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787792, Length=197, Percent_Identity=31.4720812182741, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1786345, Length=208, Percent_Identity=30.2884615384615, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1787143, Length=208, Percent_Identity=28.3653846153846, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1790190, Length=208, Percent_Identity=25.9615384615385, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1788472, Length=215, Percent_Identity=25.1162790697674, Blast_Score=61, Evalue=6e-11, Organism=Escherichia coli, GI1787112, Length=179, Percent_Identity=32.9608938547486, Blast_Score=60, Evalue=9e-11, Organism=Escherichia coli, GI1789963, Length=230, Percent_Identity=27.8260869565217, Blast_Score=60, Evalue=9e-11, Organism=Caenorhabditis elegans, GI212646699, Length=190, Percent_Identity=27.3684210526316, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI25146777, Length=190, Percent_Identity=31.0526315789474, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17567265, Length=200, Percent_Identity=30.5, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322640, Length=200, Percent_Identity=30, Blast_Score=69, Evalue=9e-13, Organism=Saccharomyces cerevisiae, GI6323217, Length=191, Percent_Identity=27.7486910994764, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI21357907, Length=216, Percent_Identity=31.4814814814815, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI85816269, Length=193, Percent_Identity=26.9430051813472, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI24580553, Length=193, Percent_Identity=26.9430051813472, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI85724864, Length=193, Percent_Identity=26.9430051813472, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI24580555, Length=193, Percent_Identity=26.9430051813472, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI19920532, Length=208, Percent_Identity=27.8846153846154, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI24580930, Length=208, Percent_Identity=27.8846153846154, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI85726357, Length=203, Percent_Identity=30.0492610837438, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR012701 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 25023; Mature: 24892
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPMTMTVMLDVDNARKTFTMHLQGGISLPVVQGVSFQVAAGECVVLSGPSGAGKSSILK CCCEEEEEEEECCCCCEEEEEEECCCCCCEEECCCEEEEECCCEEEEECCCCCCHHHHHH MIFGNYRCDGGRISVRHQGEMTNLAGAEPRLVLDARRHTIGYVSQFLRAVPRVAALDVVA HHHCCEECCCCEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCHHHHHHHHH EPLLAAGGTREEARARAGALLALLNIPERLWSLPPSTFSGGEQQRVNIARGFISDLPILL HHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEE LDEPTASLDAANRAVVVDLIAAKKQAGVAMIAIVHDDDIRAAIADRTVDVTNFAAAA ECCCCCCCCCCCCEEEEEEEHHHCCCCEEEEEEEECCCCEEEHHCCEEEHHHHCCCC >Mature Secondary Structure SPMTMTVMLDVDNARKTFTMHLQGGISLPVVQGVSFQVAAGECVVLSGPSGAGKSSILK CCEEEEEEEECCCCCEEEEEEECCCCCCEEECCCEEEEECCCEEEEECCCCCCHHHHHH MIFGNYRCDGGRISVRHQGEMTNLAGAEPRLVLDARRHTIGYVSQFLRAVPRVAALDVVA HHHCCEECCCCEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCHHHHHHHHH EPLLAAGGTREEARARAGALLALLNIPERLWSLPPSTFSGGEQQRVNIARGFISDLPILL HHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEE LDEPTASLDAANRAVVVDLIAAKKQAGVAMIAIVHDDDIRAAIADRTVDVTNFAAAA ECCCCCCCCCCCCEEEEEEEHHHCCCCEEEEEEEECCCCEEEHHCCEEEHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 1840580; 7610040; 9278503 [H]