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The map label for this gene is ygiK [H]

Identifier: 146342148

GI number: 146342148

Start: 5511188

End: 5512477

Strand: Direct

Name: ygiK [H]

Synonym: BRADO5297

Alternate gene names: 146342148

Gene position: 5511188-5512477 (Clockwise)

Preceding gene: 146342147

Following gene: 146342151

Centisome position: 73.91

GC content: 60.23

Gene sequence:

>1290_bases
ATGGACATCTTTATTTTGCTTGCGACAATGCTGGTGTGCTTCCTGATCGGGATGCCCATCGCCTACTCCCTGGCGCTTGC
CGCAATCGCCGGCGCACTCTCCGTCGGCATTCCACTCGAAGCCGTGATGCTCAAGATCTCGGACGGCGTCAGCAAGGTCG
CGATGCTGACGATCCCGTTTTTCGTGCTTGCCGGCGCGATCATGGCGGAAGGTGGAATGGCCAAACGGCTCGTGGCGTTC
GCCGACGTTCTGGTCGGCCTGACCCGCTTGCGCGGCGGCCTTTCGATCGTGAACGTGCTAGCAACGACCTTCCTGAGCGG
CATCTCCGGCTCAGCCGTCGCCGATACATCCGCAATCGGCTCGGTGATGATCCCGCAGATGGAGCGCAACGGCTATCCGC
GTGTCTTCGCCACCAATCTGACCATCAGTTCGTCGGTTCAGGCGCTTCTGGTTCCGCCAAGCCATAACGCGGTCCTCTAT
TCACTCGCGACCGGCGGCACGATCTCGATCAGCGCGCTGTTCATGGCGGGCGTATTTCCGGGCCTCCTGCTCGGCTTTTC
ACTGATCATGCTGTGCATCGTGATCGCTTATCGCGAGGGTCATCCGCAGGGCCAGAGGGTTCCCGCCAAGGACGCGGTGA
AGATCACCATCGATGCGGCGTGGGGCCTCATCACGCTTGTGATCATCCTCGGGGGCATTCTTGGCGGCATCTTCACAGCG
ATCGAAGCCGGTGCCGTCGCTTGCATCTGGGCATTCTTCGTCACCATGTTCATCTATCGCGACTACCGCTGGCGTGATCT
GCCTGTGCTGCTGCATCGGACGCTGCGCACGGTCGCCATGGTCATGACCCTGATCGCCTGTGCTTCGGCGGTCGGCTATA
TCATGGCCCTCACGCAGATGCCGTCAAAGATGACGCAGTTCTTCCTGTCGATCTCGAGCAACAAATACGTCATCCTGCTC
CTGATCAACGTGCTGCTCTTGCTGCTGGGGACGCTCGTCGACATGGCCCCGTCGATCCTGATCGCGACACCGATCCTGCT
CCCCGTCATGCAGAATTTCGGCGTCGACCCGGTTCACTTTGGCATGATCATGCTGCTCAATCTCGGCATCGGGCTTTGTC
ATCCTCCCGTCGGCGCAATCCTGTTCGTTGGTTGCGCCGTCGGCAAGGTCTCGATCGAGCAGGTCATGCGCAGGATCTGG
CCGTTCTACGCGGTGATGTTCGGCGTCCTGATGGCCGTCACCTATATTCCGGAAATCTCGCTCTGGCTGCCGCGCCATAT
TCTCCGATGA

Upstream 100 bases:

>100_bases
TTTTCATCATCGAACGGCTGTTCCTCGGCGCGCCGCCGGACCCGATCCCGCACCACGACACAGATTCGTTCGAGTAAGCC
CGCCAGCCGAGTCAGACCCG

Downstream 100 bases:

>100_bases
AGGCTCTCGCATCCGGGTCCGCGCCCCCGCCAGGTTCGCACTGGTCTGATCTATGCTGAGAGGCTGAGAAAGAGCGCATA
CCAGCGAGCGAGATGTCGCT

Product: putative TRAP-type C4-dicarboxylate transport system, large permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MDIFILLATMLVCFLIGMPIAYSLALAAIAGALSVGIPLEAVMLKISDGVSKVAMLTIPFFVLAGAIMAEGGMAKRLVAF
ADVLVGLTRLRGGLSIVNVLATTFLSGISGSAVADTSAIGSVMIPQMERNGYPRVFATNLTISSSVQALLVPPSHNAVLY
SLATGGTISISALFMAGVFPGLLLGFSLIMLCIVIAYREGHPQGQRVPAKDAVKITIDAAWGLITLVIILGGILGGIFTA
IEAGAVACIWAFFVTMFIYRDYRWRDLPVLLHRTLRTVAMVMTLIACASAVGYIMALTQMPSKMTQFFLSISSNKYVILL
LINVLLLLLGTLVDMAPSILIATPILLPVMQNFGVDPVHFGMIMLLNLGIGLCHPPVGAILFVGCAVGKVSIEQVMRRIW
PFYAVMFGVLMAVTYIPEISLWLPRHILR

Sequences:

>Translated_429_residues
MDIFILLATMLVCFLIGMPIAYSLALAAIAGALSVGIPLEAVMLKISDGVSKVAMLTIPFFVLAGAIMAEGGMAKRLVAF
ADVLVGLTRLRGGLSIVNVLATTFLSGISGSAVADTSAIGSVMIPQMERNGYPRVFATNLTISSSVQALLVPPSHNAVLY
SLATGGTISISALFMAGVFPGLLLGFSLIMLCIVIAYREGHPQGQRVPAKDAVKITIDAAWGLITLVIILGGILGGIFTA
IEAGAVACIWAFFVTMFIYRDYRWRDLPVLLHRTLRTVAMVMTLIACASAVGYIMALTQMPSKMTQFFLSISSNKYVILL
LINVLLLLLGTLVDMAPSILIATPILLPVMQNFGVDPVHFGMIMLLNLGIGLCHPPVGAILFVGCAVGKVSIEQVMRRIW
PFYAVMFGVLMAVTYIPEISLWLPRHILR
>Mature_429_residues
MDIFILLATMLVCFLIGMPIAYSLALAAIAGALSVGIPLEAVMLKISDGVSKVAMLTIPFFVLAGAIMAEGGMAKRLVAF
ADVLVGLTRLRGGLSIVNVLATTFLSGISGSAVADTSAIGSVMIPQMERNGYPRVFATNLTISSSVQALLVPPSHNAVLY
SLATGGTISISALFMAGVFPGLLLGFSLIMLCIVIAYREGHPQGQRVPAKDAVKITIDAAWGLITLVIILGGILGGIFTA
IEAGAVACIWAFFVTMFIYRDYRWRDLPVLLHRTLRTVAMVMTLIACASAVGYIMALTQMPSKMTQFFLSISSNKYVILL
LINVLLLLLGTLVDMAPSILIATPILLPVMQNFGVDPVHFGMIMLLNLGIGLCHPPVGAILFVGCAVGKVSIEQVMRRIW
PFYAVMFGVLMAVTYIPEISLWLPRHILR

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yiaN/ygiK family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=420, Percent_Identity=33.8095238095238, Blast_Score=205, Evalue=5e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 45846; Mature: 45846

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIFILLATMLVCFLIGMPIAYSLALAAIAGALSVGIPLEAVMLKISDGVSKVAMLTIPF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHH
FVLAGAIMAEGGMAKRLVAFADVLVGLTRLRGGLSIVNVLATTFLSGISGSAVADTSAIG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
SVMIPQMERNGYPRVFATNLTISSSVQALLVPPSHNAVLYSLATGGTISISALFMAGVFP
HHHCCHHHCCCCCEEEEECEEECCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHH
GLLLGFSLIMLCIVIAYREGHPQGQRVPAKDAVKITIDAAWGLITLVIILGGILGGIFTA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
IEAGAVACIWAFFVTMFIYRDYRWRDLPVLLHRTLRTVAMVMTLIACASAVGYIMALTQM
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PSKMTQFFLSISSNKYVILLLINVLLLLLGTLVDMAPSILIATPILLPVMQNFGVDPVHF
HHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHH
GMIMLLNLGIGLCHPPVGAILFVGCAVGKVSIEQVMRRIWPFYAVMFGVLMAVTYIPEIS
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LWLPRHILR
HHHHHHHCC
>Mature Secondary Structure
MDIFILLATMLVCFLIGMPIAYSLALAAIAGALSVGIPLEAVMLKISDGVSKVAMLTIPF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHH
FVLAGAIMAEGGMAKRLVAFADVLVGLTRLRGGLSIVNVLATTFLSGISGSAVADTSAIG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
SVMIPQMERNGYPRVFATNLTISSSVQALLVPPSHNAVLYSLATGGTISISALFMAGVFP
HHHCCHHHCCCCCEEEEECEEECCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHH
GLLLGFSLIMLCIVIAYREGHPQGQRVPAKDAVKITIDAAWGLITLVIILGGILGGIFTA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
IEAGAVACIWAFFVTMFIYRDYRWRDLPVLLHRTLRTVAMVMTLIACASAVGYIMALTQM
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PSKMTQFFLSISSNKYVILLLINVLLLLLGTLVDMAPSILIATPILLPVMQNFGVDPVHF
HHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHH
GMIMLLNLGIGLCHPPVGAILFVGCAVGKVSIEQVMRRIWPFYAVMFGVLMAVTYIPEIS
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LWLPRHILR
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]