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The map label for this gene is ydfH [H]

Identifier: 146342145

GI number: 146342145

Start: 5508871

End: 5509557

Strand: Direct

Name: ydfH [H]

Synonym: BRADO5294

Alternate gene names: 146342145

Gene position: 5508871-5509557 (Clockwise)

Preceding gene: 146342139

Following gene: 146342146

Centisome position: 73.88

GC content: 61.72

Gene sequence:

>687_bases
ATGCGCCGCAACGGCCGGCCGCGTGGAGCCACGGCGGCATCGCGGATCTATGCTGACCTTCGCGCCGAGCTGGTGTCCCT
GGTGCGCCGGCCGGGCGAGCCGATTTCGGAAGCGCAGATCGCAACGGCCTACGGCGTGAGCCGGACGCCGGTTCGGGAAG
CCATCCTGAAACTTTCGGACGAAGGGCTGGTCGAGATCTTCCCGCAGTCCGGCATTTTCGTCTCTCGAATACCAGTGGCT
GCGCTCCCCGAAACAATCATCATTCGCAAGTCTCTTGAAGAGACGACCGCGCGAATGGCCGCCGAGCACGCGACATCCAG
CCAAGTTCTCAGCTTGCGAGCGATACTGGAGCGCCAACGCGAAGCGTGCGCTGCGAAAGATCGCGAAGCCTTTCACCAAG
CGGATGAGCTGTTTCATGCGGGTATCGCCGAGGTGGCTGGCTATCCTGGGATATGGAAGCTGATCCTGCAAGTGAAGGTG
CACGTCGACCGGTTTCGACGCCTGACCTTGCCGCAGATCGGACGAATGACGGAAGTGATTGGCGAACACGAGCCGATCCT
GACGGCGATCGAACGGCGCGACACCGACGGCGCACGCGCTGCCATGGCCAGTCATCTCGAACGGCTGCTCGACGATATCT
CTGAAATTCAGACCCTCAATCCCGAGTGTTTCGACCAACCGAGCTAG

Upstream 100 bases:

>100_bases
CAAAGTCAATTCGTATATTAGTATATTAGTTGAGGAAACATCGATGCCCAGCCGCGCCCCTAGGAAATTGACTCCCGCGC
CACATCCCGTCGTCGCCCGC

Downstream 100 bases:

>100_bases
CAATTGCAGCCGCGGCATCCACTGCGGTCTGTCGACCAGGCAAAGTCCGTGGGAGGGACGCCATGAAGAGACGTGATTTC
ATCAAATTGACCGCAGGCAT

Product: putative GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MRRNGRPRGATAASRIYADLRAELVSLVRRPGEPISEAQIATAYGVSRTPVREAILKLSDEGLVEIFPQSGIFVSRIPVA
ALPETIIIRKSLEETTARMAAEHATSSQVLSLRAILERQREACAAKDREAFHQADELFHAGIAEVAGYPGIWKLILQVKV
HVDRFRRLTLPQIGRMTEVIGEHEPILTAIERRDTDGARAAMASHLERLLDDISEIQTLNPECFDQPS

Sequences:

>Translated_228_residues
MRRNGRPRGATAASRIYADLRAELVSLVRRPGEPISEAQIATAYGVSRTPVREAILKLSDEGLVEIFPQSGIFVSRIPVA
ALPETIIIRKSLEETTARMAAEHATSSQVLSLRAILERQREACAAKDREAFHQADELFHAGIAEVAGYPGIWKLILQVKV
HVDRFRRLTLPQIGRMTEVIGEHEPILTAIERRDTDGARAAMASHLERLLDDISEIQTLNPECFDQPS
>Mature_228_residues
MRRNGRPRGATAASRIYADLRAELVSLVRRPGEPISEAQIATAYGVSRTPVREAILKLSDEGLVEIFPQSGIFVSRIPVA
ALPETIIIRKSLEETTARMAAEHATSSQVLSLRAILERQREACAAKDREAFHQADELFHAGIAEVAGYPGIWKLILQVKV
HVDRFRRLTLPQIGRMTEVIGEHEPILTAIERRDTDGARAAMASHLERLLDDISEIQTLNPECFDQPS

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=210, Percent_Identity=33.3333333333333, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1790780, Length=252, Percent_Identity=27.7777777777778, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87081914, Length=206, Percent_Identity=24.2718446601942, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25321; Mature: 25321

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRNGRPRGATAASRIYADLRAELVSLVRRPGEPISEAQIATAYGVSRTPVREAILKLSD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCC
EGLVEIFPQSGIFVSRIPVAALPETIIIRKSLEETTARMAAEHATSSQVLSLRAILERQR
CCCEEECCCCCEEHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EACAAKDREAFHQADELFHAGIAEVAGYPGIWKLILQVKVHVDRFRRLTLPQIGRMTEVI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
GEHEPILTAIERRDTDGARAAMASHLERLLDDISEIQTLNPECFDQPS
CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRRNGRPRGATAASRIYADLRAELVSLVRRPGEPISEAQIATAYGVSRTPVREAILKLSD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCC
EGLVEIFPQSGIFVSRIPVAALPETIIIRKSLEETTARMAAEHATSSQVLSLRAILERQR
CCCEEECCCCCEEHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EACAAKDREAFHQADELFHAGIAEVAGYPGIWKLILQVKVHVDRFRRLTLPQIGRMTEVI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
GEHEPILTAIERRDTDGARAAMASHLERLLDDISEIQTLNPECFDQPS
CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]