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The map label for this gene is ydfH [H]

Identifier: 146342132

GI number: 146342132

Start: 5490712

End: 5491470

Strand: Direct

Name: ydfH [H]

Synonym: BRADO5279

Alternate gene names: 146342132

Gene position: 5490712-5491470 (Clockwise)

Preceding gene: 146342125

Following gene: 146342133

Centisome position: 73.64

GC content: 66.53

Gene sequence:

>759_bases
ATGAGTTCCACGACTCCCGATACCGAGGCGCCCTCCGTGGCAGATCCTGGCGTTCGCGCGCTTCCGGCGCGCGACGAGAC
ATCGTTGCATGACGAGATCCTGGCGCGGCTGCGCGACTACATCGTCGAGGGCCATGTCGCCGATGGCGGCCGGCTGTCGG
AGCGGCAGTTGTGCGAGATGCTCGGCGTTTCCAGGACGCCCCTGCGGGAGGCTCTCAAGGTCCTGGCTGCCGAGGGCCTG
GTCGAGTTGCTACCCAACCGCGGCGCCCGCGTCCGCCCGCTGAGCGCCGCCGACATCCGCGAGCTGTTCGACCTGATGGG
AGGGCTGGAGGGCCTCGCGGGACGCCTCGCCTGCGAGAAGATCGCCGATGAAGCGATCGCGAAGATCGAGCAATATCATC
ACGATATGTACGGATTCTACATGCGGCAGGACATGCAGGGCTATTTCCGCATGAACCAGCTCATCCACCGCGCGATCGTC
AATGCCGCCGGCAATGCCACGCTTCAATCGACGTATGAAAGCCTGGCCGGACGTATCCGCCGGGTGCGCTTCTCGGCCAA
TTTCGCCCGCAGGCGGGAGCGCTGGAGCGAGGCCATGCGCGAGCACGAGCTGATCCTCGACGCGCTGCGCCGCCGCGCCG
GCAGCGAGCTGTCGGACATCCTGTTTCAGCACCTGCGCAACAAAGGGGCGGCCGCGATCACGTATTTTGCGGAGAGCCTC
GAAGGGCCCGCCGCAGCGCCTGGAGGCAGTCCCGGATAG

Upstream 100 bases:

>100_bases
ATGACACCAACAATTGCATTCAAAATATAGTAATACAAGAAATTAATGCATTCATATATGAGATCGACCTCATCTGTGTC
CCCCGCTACAATGGTAGGGC

Downstream 100 bases:

>100_bases
ACTAAAGTCGAGGTCCATCGTCCGGAATTGCATGCAATCCGGTTGACCCTTCTTCATAAATGATTGACACCGGGACGAGC
CCCGTGGAACTGCGACGCGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MSSTTPDTEAPSVADPGVRALPARDETSLHDEILARLRDYIVEGHVADGGRLSERQLCEMLGVSRTPLREALKVLAAEGL
VELLPNRGARVRPLSAADIRELFDLMGGLEGLAGRLACEKIADEAIAKIEQYHHDMYGFYMRQDMQGYFRMNQLIHRAIV
NAAGNATLQSTYESLAGRIRRVRFSANFARRRERWSEAMREHELILDALRRRAGSELSDILFQHLRNKGAAAITYFAESL
EGPAAAPGGSPG

Sequences:

>Translated_252_residues
MSSTTPDTEAPSVADPGVRALPARDETSLHDEILARLRDYIVEGHVADGGRLSERQLCEMLGVSRTPLREALKVLAAEGL
VELLPNRGARVRPLSAADIRELFDLMGGLEGLAGRLACEKIADEAIAKIEQYHHDMYGFYMRQDMQGYFRMNQLIHRAIV
NAAGNATLQSTYESLAGRIRRVRFSANFARRRERWSEAMREHELILDALRRRAGSELSDILFQHLRNKGAAAITYFAESL
EGPAAAPGGSPG
>Mature_251_residues
SSTTPDTEAPSVADPGVRALPARDETSLHDEILARLRDYIVEGHVADGGRLSERQLCEMLGVSRTPLREALKVLAAEGLV
ELLPNRGARVRPLSAADIRELFDLMGGLEGLAGRLACEKIADEAIAKIEQYHHDMYGFYMRQDMQGYFRMNQLIHRAIVN
AAGNATLQSTYESLAGRIRRVRFSANFARRRERWSEAMREHELILDALRRRAGSELSDILFQHLRNKGAAAITYFAESLE
GPAAAPGGSPG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=199, Percent_Identity=28.643216080402, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27885; Mature: 27754

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTTPDTEAPSVADPGVRALPARDETSLHDEILARLRDYIVEGHVADGGRLSERQLCEM
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
LGVSRTPLREALKVLAAEGLVELLPNRGARVRPLSAADIRELFDLMGGLEGLAGRLACEK
HCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IADEAIAKIEQYHHDMYGFYMRQDMQGYFRMNQLIHRAIVNAAGNATLQSTYESLAGRIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
RVRFSANFARRRERWSEAMREHELILDALRRRAGSELSDILFQHLRNKGAAAITYFAESL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHH
EGPAAAPGGSPG
CCCCCCCCCCCC
>Mature Secondary Structure 
SSTTPDTEAPSVADPGVRALPARDETSLHDEILARLRDYIVEGHVADGGRLSERQLCEM
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
LGVSRTPLREALKVLAAEGLVELLPNRGARVRPLSAADIRELFDLMGGLEGLAGRLACEK
HCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IADEAIAKIEQYHHDMYGFYMRQDMQGYFRMNQLIHRAIVNAAGNATLQSTYESLAGRIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
RVRFSANFARRRERWSEAMREHELILDALRRRAGSELSDILFQHLRNKGAAAITYFAESL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHH
EGPAAAPGGSPG
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]