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The map label for this gene is yncD [H]

Identifier: 146342006

GI number: 146342006

Start: 5343143

End: 5345353

Strand: Reverse

Name: yncD [H]

Synonym: BRADO5143

Alternate gene names: 146342006

Gene position: 5345353-5343143 (Counterclockwise)

Preceding gene: 146342007

Following gene: 146342005

Centisome position: 71.69

GC content: 65.26

Gene sequence:

>2211_bases
ATGTCCCGCTCCGTAACCGCGCTTTGCGCGGCGACGTGCCTTGTCACGTTGTCATCTCCCTGTTTCTCCCAAGCTTCCAC
CCAAGTCCGAGAGCTAACCAATCTGCCGATGGTGACGGTCGACCCGGCCAAGCGCGCAGCGCCGCGCGCGGCCAGGCCCG
CCGGCAATGATCAGTCCGCAGCGCCGACGCGCGCGGCCAGATCGGCGGCTGAGCCGCGCGCCGCTTCTGCCGTTCCTGCT
GGCCCGGCGCCGAGCCGGACCGCCCCCAACACGCAAACCGCGACCCAGCGCATCCAGCAGACGCCGGGCGCGGTCGCCGT
CGTGCCGGATACCGCGTTCAAGACCGGCGCGGCGCAGACCATCAAGGACGTGCTCGACTACGTGCCCGGCGTGTTCGCGC
AGCCAAAATGGGGCGACGACACCCGGCTGTCGATTCGCGGCTCCGGCCTTTCGCGCAACTTCCATCTGCGCGGCACCCAG
CTCTATCTCGACGGCATCCCGATCAACACCGCCGACGGCTATGGTGATTTCCAGGAGATCGACCCGACCGCCTATCGCTA
TGTCGAGGTCTACAAGGGCGCCAATGCGCTGCGCTACGGTGCCAACTCGCTCGGCGGCGCCGTCAACTTCGTCACGCCCA
CCGGCCGTGACGCCTCCGCGTTCGAGAGCCGGCTGGATGGCGGCGCGTTCGGCTTCCTCCGCGGCCAGGCCTCGTCCGGC
GGCGTCGCCGGCGCGGCCGACTATTTCGTGACCGGCTCCGCCTCGCGCGTCGACGGCTATCGCGACCACAGTTGGGGCAC
GTCCGAGCGCGGCAGCGCCAATGTCGGCTATCAGGTCTCGCCCGATTTCGAGACCCGCTTTTATCTCAACGCCAATTCGG
TGCGGCAGCGCATCCCCGGCGAGGTCAGCAAGACCAGCGCGCTGACCTCGCCGCAGACGGCCGCGGCCAACAATTTGCTC
AACGACTGGCAGCGCAACATCGACACGGTGCGCGTCGCCAACAAGTCCACCCTCCATCTCGACAACACCGATGTCGAGTT
CGGCGTGTTCGCGGTCGACCGGCATCTGATGCATCCGATCTTCCAGTGGCTCGACTACCGCTATCACGATTACGGCGGCT
TCGTGCGTGCCATCGACGATCGCGAGATCGGCGGCCATCGCAACCGTTTCACCGTTGGGCTCAACATCCAGAACGGCACG
ACGGATGCCAACCAGTTCGTCAATATCGGCGCCAACAAGGGCATGCAGATGTCCTCGCTGGTGCAGAATCCGGAGAACTA
TACGCTGTATGCCGAGAATGCCTGGTATGCGCTGCGGAGCGTCTCGCTGATCGCCGGCGCGCAGTTCCTGCATGCGGTGC
GCAGCCAGCAGGTCAATTTTACGCTGAACGGCGATGCGGCGGGGACCGCCACCTACGACCTGTTCAGCCCGAAGCTCGGC
GTGCTCTGGGACGTCGATCCGGCCTGGCAGGTGTTCGCCAACGTCTCACGCAGCGGCGAGGCGCCGAGCTTCGGCGAGAA
CGTGGCGCCGACCTTTCTCAACCCGAACTTTCCGACCATCCCATTCTACAAGATCAAGGCGCAGACGGCGACGACCTGGG
AGATCGGCACCCGCGGCCGGCGGCCGGACGTCACTTGGGACTTCGCGCTGTATCACGCCGACATCCGCAACGAACTGCAG
TGCTTCTACTCGTCGTTCGGCAATTGCAACGTCACCAACGCTGACAAGACCATGCACCAGGGCGTCGAGGCCGGCCTCGG
CTTCAGCCTGCTCAAGGGGCTCGCCGTCAAGAGCGACACGCCCGACCGCGTCTGGCTCGATCTCTCCTACACCTACAGCG
ACTTCCGCTACAGCAACGATGCGACCTGGGGCAACAACCGGCTACCGGGCGCGCCGCCGCATTTCCTGCGCGCGGAGCTT
TTGTACAAGCATCCCGCCGGCTTCGCGTTCGGGCCGAACGTCGAATGGGTGCCGCAGGCTTATTTCGTCGACAGCGCCAA
TACGCTCAGCACGGATTCCTACCTGCTGTGGGGCATGAAGGCGACCTACGACGACGGCAAGAACTTCTCGGCCTATCTCG
AAGGCCGCAACCTCGCCAACAAGGCGTACATCGCGACCACCAGCATCATCGATCGCGCAACGCCGACTTCGACCCTGTTC
AATCCCGGCAACGGCCGCGGCGTCTATGCCGGCCTGCGCTACAAATTGTGA

Upstream 100 bases:

>100_bases
CGCGCGATTCCCGCCTCCGTGAACCCCGCCTGTCGCAAGGACCTCCCGCGAACGCCTGATCGACCTTTCTCATCAGGTTT
CGTTCGTCCAGAGGTTCATC

Downstream 100 bases:

>100_bases
GGAGGCGCATGATGCGCGGTCGCACCATTCGTTTGCACCACACCCAGAGGACATCCGTCGTGAAATCCATCCTGTTCGCT
CTCGCCGCCCTGTCGGTCGC

Product: putative TonB-dependent receptor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 736; Mature: 735

Protein sequence:

>736_residues
MSRSVTALCAATCLVTLSSPCFSQASTQVRELTNLPMVTVDPAKRAAPRAARPAGNDQSAAPTRAARSAAEPRAASAVPA
GPAPSRTAPNTQTATQRIQQTPGAVAVVPDTAFKTGAAQTIKDVLDYVPGVFAQPKWGDDTRLSIRGSGLSRNFHLRGTQ
LYLDGIPINTADGYGDFQEIDPTAYRYVEVYKGANALRYGANSLGGAVNFVTPTGRDASAFESRLDGGAFGFLRGQASSG
GVAGAADYFVTGSASRVDGYRDHSWGTSERGSANVGYQVSPDFETRFYLNANSVRQRIPGEVSKTSALTSPQTAAANNLL
NDWQRNIDTVRVANKSTLHLDNTDVEFGVFAVDRHLMHPIFQWLDYRYHDYGGFVRAIDDREIGGHRNRFTVGLNIQNGT
TDANQFVNIGANKGMQMSSLVQNPENYTLYAENAWYALRSVSLIAGAQFLHAVRSQQVNFTLNGDAAGTATYDLFSPKLG
VLWDVDPAWQVFANVSRSGEAPSFGENVAPTFLNPNFPTIPFYKIKAQTATTWEIGTRGRRPDVTWDFALYHADIRNELQ
CFYSSFGNCNVTNADKTMHQGVEAGLGFSLLKGLAVKSDTPDRVWLDLSYTYSDFRYSNDATWGNNRLPGAPPHFLRAEL
LYKHPAGFAFGPNVEWVPQAYFVDSANTLSTDSYLLWGMKATYDDGKNFSAYLEGRNLANKAYIATTSIIDRATPTSTLF
NPGNGRGVYAGLRYKL

Sequences:

>Translated_736_residues
MSRSVTALCAATCLVTLSSPCFSQASTQVRELTNLPMVTVDPAKRAAPRAARPAGNDQSAAPTRAARSAAEPRAASAVPA
GPAPSRTAPNTQTATQRIQQTPGAVAVVPDTAFKTGAAQTIKDVLDYVPGVFAQPKWGDDTRLSIRGSGLSRNFHLRGTQ
LYLDGIPINTADGYGDFQEIDPTAYRYVEVYKGANALRYGANSLGGAVNFVTPTGRDASAFESRLDGGAFGFLRGQASSG
GVAGAADYFVTGSASRVDGYRDHSWGTSERGSANVGYQVSPDFETRFYLNANSVRQRIPGEVSKTSALTSPQTAAANNLL
NDWQRNIDTVRVANKSTLHLDNTDVEFGVFAVDRHLMHPIFQWLDYRYHDYGGFVRAIDDREIGGHRNRFTVGLNIQNGT
TDANQFVNIGANKGMQMSSLVQNPENYTLYAENAWYALRSVSLIAGAQFLHAVRSQQVNFTLNGDAAGTATYDLFSPKLG
VLWDVDPAWQVFANVSRSGEAPSFGENVAPTFLNPNFPTIPFYKIKAQTATTWEIGTRGRRPDVTWDFALYHADIRNELQ
CFYSSFGNCNVTNADKTMHQGVEAGLGFSLLKGLAVKSDTPDRVWLDLSYTYSDFRYSNDATWGNNRLPGAPPHFLRAEL
LYKHPAGFAFGPNVEWVPQAYFVDSANTLSTDSYLLWGMKATYDDGKNFSAYLEGRNLANKAYIATTSIIDRATPTSTLF
NPGNGRGVYAGLRYKL
>Mature_735_residues
SRSVTALCAATCLVTLSSPCFSQASTQVRELTNLPMVTVDPAKRAAPRAARPAGNDQSAAPTRAARSAAEPRAASAVPAG
PAPSRTAPNTQTATQRIQQTPGAVAVVPDTAFKTGAAQTIKDVLDYVPGVFAQPKWGDDTRLSIRGSGLSRNFHLRGTQL
YLDGIPINTADGYGDFQEIDPTAYRYVEVYKGANALRYGANSLGGAVNFVTPTGRDASAFESRLDGGAFGFLRGQASSGG
VAGAADYFVTGSASRVDGYRDHSWGTSERGSANVGYQVSPDFETRFYLNANSVRQRIPGEVSKTSALTSPQTAAANNLLN
DWQRNIDTVRVANKSTLHLDNTDVEFGVFAVDRHLMHPIFQWLDYRYHDYGGFVRAIDDREIGGHRNRFTVGLNIQNGTT
DANQFVNIGANKGMQMSSLVQNPENYTLYAENAWYALRSVSLIAGAQFLHAVRSQQVNFTLNGDAAGTATYDLFSPKLGV
LWDVDPAWQVFANVSRSGEAPSFGENVAPTFLNPNFPTIPFYKIKAQTATTWEIGTRGRRPDVTWDFALYHADIRNELQC
FYSSFGNCNVTNADKTMHQGVEAGLGFSLLKGLAVKSDTPDRVWLDLSYTYSDFRYSNDATWGNNRLPGAPPHFLRAELL
YKHPAGFAFGPNVEWVPQAYFVDSANTLSTDSYLLWGMKATYDDGKNFSAYLEGRNLANKAYIATTSIIDRATPTSTLFN
PGNGRGVYAGLRYKL

Specific function: Probable receptor, tonB-dependent [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=665, Percent_Identity=26.1654135338346, Blast_Score=155, Evalue=8e-39,
Organism=Escherichia coli, GI1790743, Length=682, Percent_Identity=23.4604105571848, Blast_Score=82, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 80127; Mature: 79995

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSVTALCAATCLVTLSSPCFSQASTQVRELTNLPMVTVDPAKRAAPRAARPAGNDQSA
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCHHHCCCCCCCCCCCCCCC
APTRAARSAAEPRAASAVPAGPAPSRTAPNTQTATQRIQQTPGAVAVVPDTAFKTGAAQT
CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHH
IKDVLDYVPGVFAQPKWGDDTRLSIRGSGLSRNFHLRGTQLYLDGIPINTADGYGDFQEI
HHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEEECEECCCCCCCCCHHHC
DPTAYRYVEVYKGANALRYGANSLGGAVNFVTPTGRDASAFESRLDGGAFGFLRGQASSG
CHHHHHHHHHHCCCCHHHCCCHHHCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCC
GVAGAADYFVTGSASRVDGYRDHSWGTSERGSANVGYQVSPDFETRFYLNANSVRQRIPG
CCCCCCCEEEECCCHHCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEHHHHHHHCCC
EVSKTSALTSPQTAAANNLLNDWQRNIDTVRVANKSTLHLDNTDVEFGVFAVDRHLMHPI
CHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCEEEHHHHHHHHHHHH
FQWLDYRYHDYGGFVRAIDDREIGGHRNRFTVGLNIQNGTTDANQFVNIGANKGMQMSSL
HHHHCCEECCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCHHHEEECCCCCCCCHHHH
VQNPENYTLYAENAWYALRSVSLIAGAQFLHAVRSQQVNFTLNGDAAGTATYDLFSPKLG
HCCCCCEEEEECCCEEHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCC
VLWDVDPAWQVFANVSRSGEAPSFGENVAPTFLNPNFPTIPFYKIKAQTATTWEIGTRGR
EEEECCHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCEEEEECCCCCC
RPDVTWDFALYHADIRNELQCFYSSFGNCNVTNADKTMHQGVEAGLGFSLLKGLAVKSDT
CCCCEEEEEEEEHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHCCCHHHHHCCCCCCCC
PDRVWLDLSYTYSDFRYSNDATWGNNRLPGAPPHFLRAELLYKHPAGFAFGPNVEWVPQA
CCEEEEEEEEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCE
YFVDSANTLSTDSYLLWGMKATYDDGKNFSAYLEGRNLANKAYIATTSIIDRATPTSTLF
EEECCCCCCCCCCEEEEEEEEECCCCCCEEEEECCCCCCCCEEEEEHHHHHCCCCCCCEE
NPGNGRGVYAGLRYKL
CCCCCCEEEEEEEECC
>Mature Secondary Structure 
SRSVTALCAATCLVTLSSPCFSQASTQVRELTNLPMVTVDPAKRAAPRAARPAGNDQSA
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCHHHCCCCCCCCCCCCCCC
APTRAARSAAEPRAASAVPAGPAPSRTAPNTQTATQRIQQTPGAVAVVPDTAFKTGAAQT
CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHH
IKDVLDYVPGVFAQPKWGDDTRLSIRGSGLSRNFHLRGTQLYLDGIPINTADGYGDFQEI
HHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEEECEECCCCCCCCCHHHC
DPTAYRYVEVYKGANALRYGANSLGGAVNFVTPTGRDASAFESRLDGGAFGFLRGQASSG
CHHHHHHHHHHCCCCHHHCCCHHHCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCC
GVAGAADYFVTGSASRVDGYRDHSWGTSERGSANVGYQVSPDFETRFYLNANSVRQRIPG
CCCCCCCEEEECCCHHCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEHHHHHHHCCC
EVSKTSALTSPQTAAANNLLNDWQRNIDTVRVANKSTLHLDNTDVEFGVFAVDRHLMHPI
CHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCEEEHHHHHHHHHHHH
FQWLDYRYHDYGGFVRAIDDREIGGHRNRFTVGLNIQNGTTDANQFVNIGANKGMQMSSL
HHHHCCEECCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCHHHEEECCCCCCCCHHHH
VQNPENYTLYAENAWYALRSVSLIAGAQFLHAVRSQQVNFTLNGDAAGTATYDLFSPKLG
HCCCCCEEEEECCCEEHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCC
VLWDVDPAWQVFANVSRSGEAPSFGENVAPTFLNPNFPTIPFYKIKAQTATTWEIGTRGR
EEEECCHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCEEEEECCCCCC
RPDVTWDFALYHADIRNELQCFYSSFGNCNVTNADKTMHQGVEAGLGFSLLKGLAVKSDT
CCCCEEEEEEEEHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHCCCHHHHHCCCCCCCC
PDRVWLDLSYTYSDFRYSNDATWGNNRLPGAPPHFLRAELLYKHPAGFAFGPNVEWVPQA
CCEEEEEEEEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCE
YFVDSANTLSTDSYLLWGMKATYDDGKNFSAYLEGRNLANKAYIATTSIIDRATPTSTLF
EEECCCCCCCCCCEEEEEEEEECCCCCCEEEEECCCCCCCCEEEEEHHHHHCCCCCCCEE
NPGNGRGVYAGLRYKL
CCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]