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The map label for this gene is qseB [H]

Identifier: 146341965

GI number: 146341965

Start: 5301892

End: 5302557

Strand: Reverse

Name: qseB [H]

Synonym: BRADO5101

Alternate gene names: 146341965

Gene position: 5302557-5301892 (Counterclockwise)

Preceding gene: 146341966

Following gene: 146341964

Centisome position: 71.11

GC content: 69.07

Gene sequence:

>666_bases
ATGCGCGTGCTGCTGGTCGAGGATGATCCGCGCCTGTCGTCGGATCTGTCGCGGACGCTGCAGGCCGCCGGCTATCTGGT
CGAGACCTCAGCCAATGGCGAGCAGGCCTGGTTTCTCGGCGACACCGAGGATTACGGCGCCGTCGTGCTCGATCTCGGCC
TGCCCGGCATGGACGGCCTCTCGGTGCTGAAGCGCTGGCGCGGCGCCGGCCGGCACATGCCGGTGCTGATCCTGACCGCG
CGCGCGAGCTGGGCCGAGCGGGTCGACGGCATCGATGCCGGCGCCGACGATTATCTGCCAAAGCCGTTCCGCAACGAGGA
GCTGCTGGCGCGCCTGCGCGCCATCGTCAGGCGCTCCGCCGGCCACGCGGCGCCGGTGCTGTCATCGGGCGATCTCGCGC
TCGACGAGCGCCAGATGAAGGTCAGCCTGTCCGGCGTGCCGGTGGCGCTGTCGCAGCTCGAATACCGCCTGATCGCCTAT
CTGTTGCGGCACAACGGCCGCGTGGTGCCGCAGCACGAGCTCGAGGAGAACGTCTACGGCCTTGGCCACGACCACGATTC
CAACGCGCTGGAGGTGCTGATCCGCCGCGTCCGCAAGAAGCTCGGCGCCGACATCATCGAGACCCGCCGCGGCTTCGGCT
ACATGATTCCGGAGACCGCCGAATGA

Upstream 100 bases:

>100_bases
CTGGCGCTATGAGTTTCGGGTGATCGGCCGCGACGGCCGCATGCGCGAGGTCTATATCGACGCGCGCAGCGGCGAGATCG
AGCGGGTCGAGGAAAAGTAG

Downstream 100 bases:

>100_bases
GGCTGGGCTCGCTGCGGCTGCGGCTGGTCGCGGCAGGCACCATCGCCATCCTCGTTGCGCTCGGTGTCGCCGGCGCCGGC
ATGGTGGTGCTGTTCAAGCG

Product: putative two-component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MRVLLVEDDPRLSSDLSRTLQAAGYLVETSANGEQAWFLGDTEDYGAVVLDLGLPGMDGLSVLKRWRGAGRHMPVLILTA
RASWAERVDGIDAGADDYLPKPFRNEELLARLRAIVRRSAGHAAPVLSSGDLALDERQMKVSLSGVPVALSQLEYRLIAY
LLRHNGRVVPQHELEENVYGLGHDHDSNALEVLIRRVRKKLGADIIETRRGFGYMIPETAE

Sequences:

>Translated_221_residues
MRVLLVEDDPRLSSDLSRTLQAAGYLVETSANGEQAWFLGDTEDYGAVVLDLGLPGMDGLSVLKRWRGAGRHMPVLILTA
RASWAERVDGIDAGADDYLPKPFRNEELLARLRAIVRRSAGHAAPVLSSGDLALDERQMKVSLSGVPVALSQLEYRLIAY
LLRHNGRVVPQHELEENVYGLGHDHDSNALEVLIRRVRKKLGADIIETRRGFGYMIPETAE
>Mature_221_residues
MRVLLVEDDPRLSSDLSRTLQAAGYLVETSANGEQAWFLGDTEDYGAVVLDLGLPGMDGLSVLKRWRGAGRHMPVLILTA
RASWAERVDGIDAGADDYLPKPFRNEELLARLRAIVRRSAGHAAPVLSSGDLALDERQMKVSLSGVPVALSQLEYRLIAY
LLRHNGRVVPQHELEENVYGLGHDHDSNALEVLIRRVRKKLGADIIETRRGFGYMIPETAE

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=218, Percent_Identity=42.6605504587156, Blast_Score=167, Evalue=4e-43,
Organism=Escherichia coli, GI1786784, Length=224, Percent_Identity=37.9464285714286, Blast_Score=160, Evalue=9e-41,
Organism=Escherichia coli, GI1787375, Length=220, Percent_Identity=37.2727272727273, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI87082012, Length=218, Percent_Identity=36.697247706422, Blast_Score=147, Evalue=5e-37,
Organism=Escherichia coli, GI1790552, Length=221, Percent_Identity=39.3665158371041, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=33.920704845815, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1790860, Length=219, Percent_Identity=32.4200913242009, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI2367329, Length=228, Percent_Identity=35.0877192982456, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI1786911, Length=226, Percent_Identity=32.3008849557522, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1786599, Length=220, Percent_Identity=31.3636363636364, Blast_Score=103, Evalue=7e-24,
Organism=Escherichia coli, GI1788394, Length=222, Percent_Identity=29.7297297297297, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787229, Length=222, Percent_Identity=26.1261261261261, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790863, Length=227, Percent_Identity=25.5506607929515, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI145693140, Length=237, Percent_Identity=26.1603375527426, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790299, Length=120, Percent_Identity=34.1666666666667, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1788550, Length=107, Percent_Identity=32.7102803738318, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24463; Mature: 24463

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLLVEDDPRLSSDLSRTLQAAGYLVETSANGEQAWFLGDTEDYGAVVLDLGLPGMDGL
CEEEEECCCCCHHHHHHHHHHHCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCCCHH
SVLKRWRGAGRHMPVLILTARASWAERVDGIDAGADDYLPKPFRNEELLARLRAIVRRSA
HHHHHHHCCCCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
GHAAPVLSSGDLALDERQMKVSLSGVPVALSQLEYRLIAYLLRHNGRVVPQHELEENVYG
CCCCCCCCCCCCEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
LGHDHDSNALEVLIRRVRKKLGADIIETRRGFGYMIPETAE
CCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRVLLVEDDPRLSSDLSRTLQAAGYLVETSANGEQAWFLGDTEDYGAVVLDLGLPGMDGL
CEEEEECCCCCHHHHHHHHHHHCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCCCHH
SVLKRWRGAGRHMPVLILTARASWAERVDGIDAGADDYLPKPFRNEELLARLRAIVRRSA
HHHHHHHCCCCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
GHAAPVLSSGDLALDERQMKVSLSGVPVALSQLEYRLIAYLLRHNGRVVPQHELEENVYG
CCCCCCCCCCCCEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
LGHDHDSNALEVLIRRVRKKLGADIIETRRGFGYMIPETAE
CCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]