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The map label for this gene is ttuA [H]

Identifier: 146341959

GI number: 146341959

Start: 5294910

End: 5295827

Strand: Direct

Name: ttuA [H]

Synonym: BRADO5095

Alternate gene names: 146341959

Gene position: 5294910-5295827 (Clockwise)

Preceding gene: 146341954

Following gene: 146341963

Centisome position: 71.01

GC content: 70.37

Gene sequence:

>918_bases
ATGGAATTGCACCAGCTCCGCTGCTTTGTCGCTGCCGCCGAGGAGCTGCATTTCGGCAAGGCGGCGCAGCGGCTGCAGAT
GCTGCCCTCGGCGCTGGGTCGCCAGATCAAGCTGCTGGAAGAGGACCTCGCGACTCGGCTGTTCACACGCACCACGCGCG
CGGTGGCGCTGACCGAGCACGGCAGCGCGCTGCTGGGCGACGCCCGCGCCATCCTCGCGCGGGTCGAAGCGGTTGAGACC
GGCTTCCGCCGCCGCGCCCGTGGCATGAAGACGCTGCGGCTACGCGTGGGCGCCATCGACAGCGCCGCCGCAGGTCTGCT
GCCGCAGCTGCTGCATGACTTCAGAGAGGCACATCCCGACATCGCGGTGCAGATCCTGGAGGAGAAGACCCTCCGGCTGC
TGCCGAAGATCCTCTCCGGGGCGCTCGATCTCGCCTTCGTTCGGCCGCCGGAGCGCAGCGATGTCAGGCTCGAGTTTCGC
GCGCTGCTCAGCGAGAGCGCCGTGGTCGCGCTGCCGCAGCGGCATCGGCTGGCGGCGCGGGCGTCGGTGTCGCTGTCTGA
CATCACCGAGGAGCCGCTGATCGTGCCGGACCGGCGCTCGCGGCCGCACAGCCATGATCTCACGATGAAGCTGTTCGCGC
AGGCCGGACTGTCGCCTGACGTGGCGCAGGTCGCCGACGAGAAGCAGACGATCGTGCATCTCGTCGCGGCCCGGCTCGGC
ATCGCCATCGTGCCGCGCTGGACGTCGCGGCTGGCGATCTCCGGCGTGCGCTTCGTGCCGCTGCGGCTGAAGAGAGGCAG
CACCGCAGGGCGACTGCCGCTGGCCGCAGCTTGGCTGAACGGCTCGCGCGATCCGGCGCGCGAGGCGATGCTGGGTGTGC
TGGAGAGACGGCTTGCGAAGTACGCGCGAGGGGCGTGA

Upstream 100 bases:

>100_bases
GGTTCGCAGGACCGTAAGGCAGCGCAGGTGATGGCTTCAATATTCGCCTCATTATACAAAAAAATGATATAATCCCAGAG
CCCTCACAGGACCGCCGATC

Downstream 100 bases:

>100_bases
CGCGCTGAGTTCTCATGAACGGAGTCGTAGCCCGATGAGCGGAAGCCTGCGCCCGCAGGGCGGAGGCGGACGCGATATCC
GGGTTCTCACCAGCTGTCTG

Product: tartrate utilization transcriptional regulator

Products: NA

Alternate protein names: Tartrate utilization transcriptional regulator [H]

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MELHQLRCFVAAAEELHFGKAAQRLQMLPSALGRQIKLLEEDLATRLFTRTTRAVALTEHGSALLGDARAILARVEAVET
GFRRRARGMKTLRLRVGAIDSAAAGLLPQLLHDFREAHPDIAVQILEEKTLRLLPKILSGALDLAFVRPPERSDVRLEFR
ALLSESAVVALPQRHRLAARASVSLSDITEEPLIVPDRRSRPHSHDLTMKLFAQAGLSPDVAQVADEKQTIVHLVAARLG
IAIVPRWTSRLAISGVRFVPLRLKRGSTAGRLPLAAAWLNGSRDPAREAMLGVLERRLAKYARGA

Sequences:

>Translated_305_residues
MELHQLRCFVAAAEELHFGKAAQRLQMLPSALGRQIKLLEEDLATRLFTRTTRAVALTEHGSALLGDARAILARVEAVET
GFRRRARGMKTLRLRVGAIDSAAAGLLPQLLHDFREAHPDIAVQILEEKTLRLLPKILSGALDLAFVRPPERSDVRLEFR
ALLSESAVVALPQRHRLAARASVSLSDITEEPLIVPDRRSRPHSHDLTMKLFAQAGLSPDVAQVADEKQTIVHLVAARLG
IAIVPRWTSRLAISGVRFVPLRLKRGSTAGRLPLAAAWLNGSRDPAREAMLGVLERRLAKYARGA
>Mature_305_residues
MELHQLRCFVAAAEELHFGKAAQRLQMLPSALGRQIKLLEEDLATRLFTRTTRAVALTEHGSALLGDARAILARVEAVET
GFRRRARGMKTLRLRVGAIDSAAAGLLPQLLHDFREAHPDIAVQILEEKTLRLLPKILSGALDLAFVRPPERSDVRLEFR
ALLSESAVVALPQRHRLAARASVSLSDITEEPLIVPDRRSRPHSHDLTMKLFAQAGLSPDVAQVADEKQTIVHLVAARLG
IAIVPRWTSRLAISGVRFVPLRLKRGSTAGRLPLAAAWLNGSRDPAREAMLGVLERRLAKYARGA

Specific function: Transcriptional regulator of the ttuABCDE tartrate utilization operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=265, Percent_Identity=33.9622641509434, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1788887, Length=302, Percent_Identity=31.1258278145695, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI2367136, Length=273, Percent_Identity=30.4029304029304, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI145693105, Length=249, Percent_Identity=32.1285140562249, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1790399, Length=246, Percent_Identity=28.4552845528455, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1790208, Length=249, Percent_Identity=29.3172690763052, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787601, Length=290, Percent_Identity=26.2068965517241, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1788748, Length=246, Percent_Identity=28.4552845528455, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790262, Length=253, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081904, Length=210, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787806, Length=248, Percent_Identity=27.0161290322581, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787589, Length=127, Percent_Identity=35.4330708661417, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI157672245, Length=239, Percent_Identity=27.6150627615063, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786401, Length=131, Percent_Identity=31.2977099236641, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1789639, Length=252, Percent_Identity=26.5873015873016, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33569; Mature: 33569

Theoretical pI: Translated: 11.60; Mature: 11.60

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELHQLRCFVAAAEELHFGKAAQRLQMLPSALGRQIKLLEEDLATRLFTRTTRAVALTEH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECC
GSALLGDARAILARVEAVETGFRRRARGMKTLRLRVGAIDSAAAGLLPQLLHDFREAHPD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHCCCCHHHHHHHHHHHHHHHHHCCH
IAVQILEEKTLRLLPKILSGALDLAFVRPPERSDVRLEFRALLSESAVVALPQRHRLAAR
HHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHCCCCEEECCHHHHHHHH
ASVSLSDITEEPLIVPDRRSRPHSHDLTMKLFAQAGLSPDVAQVADEKQTIVHLVAARLG
HCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
IAIVPRWTSRLAISGVRFVPLRLKRGSTAGRLPLAAAWLNGSRDPAREAMLGVLERRLAK
EEEECCHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
YARGA
HHCCC
>Mature Secondary Structure
MELHQLRCFVAAAEELHFGKAAQRLQMLPSALGRQIKLLEEDLATRLFTRTTRAVALTEH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECC
GSALLGDARAILARVEAVETGFRRRARGMKTLRLRVGAIDSAAAGLLPQLLHDFREAHPD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHCCCCHHHHHHHHHHHHHHHHHCCH
IAVQILEEKTLRLLPKILSGALDLAFVRPPERSDVRLEFRALLSESAVVALPQRHRLAAR
HHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHCCCCEEECCHHHHHHHH
ASVSLSDITEEPLIVPDRRSRPHSHDLTMKLFAQAGLSPDVAQVADEKQTIVHLVAARLG
HCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
IAIVPRWTSRLAISGVRFVPLRLKRGSTAGRLPLAAAWLNGSRDPAREAMLGVLERRLAK
EEEECCHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
YARGA
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8672817 [H]