Click here to switch to the map view.

The map label for this gene is fliR [H]

Identifier: 146341891

GI number: 146341891

Start: 5215208

End: 5215975

Strand: Reverse

Name: fliR [H]

Synonym: BRADO5025

Alternate gene names: 146341891

Gene position: 5215975-5215208 (Counterclockwise)

Preceding gene: 146341892

Following gene: 146341890

Centisome position: 69.95

GC content: 63.93

Gene sequence:

>768_bases
ATGCGCATCGACATCTCGTTTCTTCCGACCTTGGCCGCGGTGTTCATGCTCGCTTTCGCGCGCATCGCCGCGATGGTGAT
GCTGCTGCCGGGGCTTGGCGAGGTCAACATTCCCGTCCGCATCAAGCTCGCCACCGCGCTCTTGCTGACGATGATCGTGC
TGCCGCTCAACCGTCAGGCCTATCAGGTCGACCTGCAGGCGCTGTCGCCGCTGGTGGTCATGATGGTGCACGAGATCGTG
ATCGGCATTGTGCTCGGCGCGACCGCGCGGGTGACGTTGTCGGCGCTGCAGGTCGCGGGCTCGGTGATCGCCCAGCAGAT
GGGGCTCGGCTTCGTCACCGCGGTCGATCCGACGCAGGGCCAGCAGGGCGTGCTGATCGGAAACTTCCTCACCATGCTCG
GCGTGACCTTGCTGTTCGCGACCGACAGCCATCATCTGGTGATCGCGGCGCTGAGCGACAGCTACAAGATCTTCGCGCCG
GGCGAACTGGTTCCGAGCGGCGATGTCGCCTCGCTGGCAACCAAGGCATTTGCGGCGGCGTTCAAGATCGGCCTGCAATT
GTCGGCACCGTTTCTGGTGTTCGGCCTGGTCTTCAACATCGGGCTCGGCGTGCTGGCGCGGCTGATGCCGCAGATGCAGG
TCTATTTTGTCGGCGCGCCGCTCTCGATCCTGATCGGCTTCCTCATCTTCGCGCTGGTGCTCACCGCGATGATGGGCACG
TTTCTCGGCTATTTCGAAGGCGTCCTCCACGAGCTGATGCCGCGGTGA

Upstream 100 bases:

>100_bases
GGCGCTGCTGCTTTCGATCGGGCGCGAGCGGCTTGCTCGCTTGGCGCTCTGCAAACCGGCGTGCCGCGGCTCGCGGCCGG
CGGCGCCGGGACCGCTGAAG

Downstream 100 bases:

>100_bases
GGGGAGCCTGACCGATGGCCGAGGAGGGTGATACCGAGGACAAAACCGAAGACCCGACGCAAAAACGCCTCGACCAGGCG
CTGGAGCGCGGCGACGTCGT

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MRIDISFLPTLAAVFMLAFARIAAMVMLLPGLGEVNIPVRIKLATALLLTMIVLPLNRQAYQVDLQALSPLVVMMVHEIV
IGIVLGATARVTLSALQVAGSVIAQQMGLGFVTAVDPTQGQQGVLIGNFLTMLGVTLLFATDSHHLVIAALSDSYKIFAP
GELVPSGDVASLATKAFAAAFKIGLQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGAPLSILIGFLIFALVLTAMMGT
FLGYFEGVLHELMPR

Sequences:

>Translated_255_residues
MRIDISFLPTLAAVFMLAFARIAAMVMLLPGLGEVNIPVRIKLATALLLTMIVLPLNRQAYQVDLQALSPLVVMMVHEIV
IGIVLGATARVTLSALQVAGSVIAQQMGLGFVTAVDPTQGQQGVLIGNFLTMLGVTLLFATDSHHLVIAALSDSYKIFAP
GELVPSGDVASLATKAFAAAFKIGLQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGAPLSILIGFLIFALVLTAMMGT
FLGYFEGVLHELMPR
>Mature_255_residues
MRIDISFLPTLAAVFMLAFARIAAMVMLLPGLGEVNIPVRIKLATALLLTMIVLPLNRQAYQVDLQALSPLVVMMVHEIV
IGIVLGATARVTLSALQVAGSVIAQQMGLGFVTAVDPTQGQQGVLIGNFLTMLGVTLLFATDSHHLVIAALSDSYKIFAP
GELVPSGDVASLATKAFAAAFKIGLQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGAPLSILIGFLIFALVLTAMMGT
FLGYFEGVLHELMPR

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=207, Percent_Identity=32.8502415458937, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 27069; Mature: 27069

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIDISFLPTLAAVFMLAFARIAAMVMLLPGLGEVNIPVRIKLATALLLTMIVLPLNRQA
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHCCCCHH
YQVDLQALSPLVVMMVHEIVIGIVLGATARVTLSALQVAGSVIAQQMGLGFVTAVDPTQG
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
QQGVLIGNFLTMLGVTLLFATDSHHLVIAALSDSYKIFAPGELVPSGDVASLATKAFAAA
CCCCHHHHHHHHHHHHHHEECCCCEEEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHH
FKIGLQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGAPLSILIGFLIFALVLTAMMGT
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHH
FLGYFEGVLHELMPR
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MRIDISFLPTLAAVFMLAFARIAAMVMLLPGLGEVNIPVRIKLATALLLTMIVLPLNRQA
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHCCCCHH
YQVDLQALSPLVVMMVHEIVIGIVLGATARVTLSALQVAGSVIAQQMGLGFVTAVDPTQG
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
QQGVLIGNFLTMLGVTLLFATDSHHLVIAALSDSYKIFAPGELVPSGDVASLATKAFAAA
CCCCHHHHHHHHHHHHHHEECCCCEEEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHH
FKIGLQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGAPLSILIGFLIFALVLTAMMGT
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHH
FLGYFEGVLHELMPR
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7814323; 11259647 [H]