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The map label for this gene is 146341876

Identifier: 146341876

GI number: 146341876

Start: 5199196

End: 5200608

Strand: Direct

Name: 146341876

Synonym: BRADO5008

Alternate gene names: NA

Gene position: 5199196-5200608 (Clockwise)

Preceding gene: 146341872

Following gene: 146341877

Centisome position: 69.73

GC content: 67.94

Gene sequence:

>1413_bases
ATGATCAACGGCGCACACCCCGCCGGGCAGACCCGCAGCGGACGCAACAATCTCGCGCCGATCCCGTTCGAATGCGACGC
GCCGATCCTCAAAATCACCGGCGAGCTGCCGCGCGAGCTCAACGGCACGCTCTATCGCAACGGTCCGAATCCGCAGTTCG
ACTCGCCCGGCGCGCACTGGTTCGTCGGCGACGGCATGCTGCACGCCTTCCATCTGGACAACGGACGCGCATCGTATCGC
AACCGTTGGGTCCGCACGCCCAAATTCGAGGCCGAGCGCAAGGCGGGCCGCGCGCTGTTCGGCGGCTTCGGCCGCAAGCT
GGCCGACGCGCCTTCTGACCTCACCGATGGCGGCGTCGCCAACACCAACATCATCTCCCATGCGGGCAAGCTGCTCGCGC
TCGAGGAGGCGCATCTGCCGACCGAGATCGAGCCGGGCACGCTCGCGACCAAAGGCTATCAGGATTTCGGCGGCCGCCTG
CGCGGCGCCTTTACCGCGCATCCGAAGACCGATCCGGTGACCGGCGAGCTGCTGTTCTTCGGCTACAACGCCGCGGGCCC
GCTGACGCCGGCGCTGACCTACGGCACGATCGACGCCGCCGGCCAACTGACGCGCCTCAATCGTTTCGAGGCGCCCTATG
CCAGCATGGTGCATGACTTCATCGTCACCGCCAACCACGTCCTGTTTCCAATCCTCCCGCTCACCGGCAGCATGCAACGC
GCGATGTCCGGCCGGCCGCCCTACGCGTGGGAGCCCGACAAGGGCGCCTATATTGGTGTGATGAAGCGGAGCGGCGACAT
CAAGGACATCGTCTGGTTTCGCGGTGACGCTTGCTACGTCTTTCACATCATGAACGCCTGGGACGACGGTCACCGGATCA
CCGCCGACGTCATGCAGTTCGACGAGCCGCCGCTGTTTCCGCATCCCGACGGCCGCCCTACCGATCCCGTGAAGTCGCGC
GCGCGGCTGTGCCGCTGGAGCTTCGATCTCGCCGGTAACACCGACCGCTTCACGCAAACCTATCTGGACGATCTCACCGG
CGAATTCCCCCGCATCGACGACCGCCGCGCGGGGCTCGCGAGCCGCCACGGCTGGTACGCCTGCGCCAATCCCGATGGAC
CACCGTTCGGCGCCCTCTCCGGCCTCGCGCATGTCGATTGCGTCGGCGCGCGACGCGCGACATACCTGCTGCCGGACGGC
GACAGCCTGTCGGAGCCGGTGTTCGTGCCGCGCAGCCCCGAGGCGCCCGAAGGCGACGGCTGGCTGCTGACGGTGGTGTG
GCGCGCCGAGACAAACACGTCCGAAATCGCGGTGTTCGGCGCCACCGAGATCGGCGCCGGGCCGATCGCGCTGGTCCATC
TCGGTCACCGCGTGCCCGACGGCTTTCACGGCAACTGGGTCGGCGCCGCCTGA

Upstream 100 bases:

>100_bases
TATACAAGCAATTTTGACAGCGTAAAGATTTAGCTTGACCCGCGACGTTCCTGCCGGTAGGTTTATCTTTACATCGTAAA
GATAAAGTGGAGGAACGATC

Downstream 100 bases:

>100_bases
CCCGGCATCGCCGCCACTTCCTGCGCAAGCCCCAACCGCACACCGGCATTCAGGATGTCACCATGAAACACGCATTGATC
GAATTGGGCACCGACTTCCT

Product: putative carotenoid oxygenase

Products: NA

Alternate protein names: ACO; 8'-apo-beta-carotenal 15,15'-oxygenase; Diox1 [H]

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MINGAHPAGQTRSGRNNLAPIPFECDAPILKITGELPRELNGTLYRNGPNPQFDSPGAHWFVGDGMLHAFHLDNGRASYR
NRWVRTPKFEAERKAGRALFGGFGRKLADAPSDLTDGGVANTNIISHAGKLLALEEAHLPTEIEPGTLATKGYQDFGGRL
RGAFTAHPKTDPVTGELLFFGYNAAGPLTPALTYGTIDAAGQLTRLNRFEAPYASMVHDFIVTANHVLFPILPLTGSMQR
AMSGRPPYAWEPDKGAYIGVMKRSGDIKDIVWFRGDACYVFHIMNAWDDGHRITADVMQFDEPPLFPHPDGRPTDPVKSR
ARLCRWSFDLAGNTDRFTQTYLDDLTGEFPRIDDRRAGLASRHGWYACANPDGPPFGALSGLAHVDCVGARRATYLLPDG
DSLSEPVFVPRSPEAPEGDGWLLTVVWRAETNTSEIAVFGATEIGAGPIALVHLGHRVPDGFHGNWVGAA

Sequences:

>Translated_470_residues
MINGAHPAGQTRSGRNNLAPIPFECDAPILKITGELPRELNGTLYRNGPNPQFDSPGAHWFVGDGMLHAFHLDNGRASYR
NRWVRTPKFEAERKAGRALFGGFGRKLADAPSDLTDGGVANTNIISHAGKLLALEEAHLPTEIEPGTLATKGYQDFGGRL
RGAFTAHPKTDPVTGELLFFGYNAAGPLTPALTYGTIDAAGQLTRLNRFEAPYASMVHDFIVTANHVLFPILPLTGSMQR
AMSGRPPYAWEPDKGAYIGVMKRSGDIKDIVWFRGDACYVFHIMNAWDDGHRITADVMQFDEPPLFPHPDGRPTDPVKSR
ARLCRWSFDLAGNTDRFTQTYLDDLTGEFPRIDDRRAGLASRHGWYACANPDGPPFGALSGLAHVDCVGARRATYLLPDG
DSLSEPVFVPRSPEAPEGDGWLLTVVWRAETNTSEIAVFGATEIGAGPIALVHLGHRVPDGFHGNWVGAA
>Mature_470_residues
MINGAHPAGQTRSGRNNLAPIPFECDAPILKITGELPRELNGTLYRNGPNPQFDSPGAHWFVGDGMLHAFHLDNGRASYR
NRWVRTPKFEAERKAGRALFGGFGRKLADAPSDLTDGGVANTNIISHAGKLLALEEAHLPTEIEPGTLATKGYQDFGGRL
RGAFTAHPKTDPVTGELLFFGYNAAGPLTPALTYGTIDAAGQLTRLNRFEAPYASMVHDFIVTANHVLFPILPLTGSMQR
AMSGRPPYAWEPDKGAYIGVMKRSGDIKDIVWFRGDACYVFHIMNAWDDGHRITADVMQFDEPPLFPHPDGRPTDPVKSR
ARLCRWSFDLAGNTDRFTQTYLDDLTGEFPRIDDRRAGLASRHGWYACANPDGPPFGALSGLAHVDCVGARRATYLLPDG
DSLSEPVFVPRSPEAPEGDGWLLTVVWRAETNTSEIAVFGATEIGAGPIALVHLGHRVPDGFHGNWVGAA

Specific function: Cleaves a number of carotenals and carotenols in the all-trans configuration at the 15-15' double bond producing retinal or retinol, respectively. Also shows activity toward lycopenals and the corresponding alcohols. Does not cleave beta- carotene or lyco

COG id: COG3670

COG function: function code Q; Lignostilbene-alpha,beta-dioxygenase and related enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid oxygenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004294 [H]

Pfam domain/function: PF03055 RPE65 [H]

EC number: =1.14.99.41 [H]

Molecular weight: Translated: 51172; Mature: 51172

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINGAHPAGQTRSGRNNLAPIPFECDAPILKITGELPRELNGTLYRNGPNPQFDSPGAHW
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHCCCEEEECCCCCCCCCCCCEE
FVGDGMLHAFHLDNGRASYRNRWVRTPKFEAERKAGRALFGGFGRKLADAPSDLTDGGVA
EECCCEEEEEEECCCCHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCC
NTNIISHAGKLLALEEAHLPTEIEPGTLATKGYQDFGGRLRGAFTAHPKTDPVTGELLFF
CCHHHHHCCCEEEEECCCCCCCCCCCCEEECCCHHHCCEEECEEECCCCCCCCCCEEEEE
GYNAAGPLTPALTYGTIDAAGQLTRLNRFEAPYASMVHDFIVTANHVLFPILPLTGSMQR
EECCCCCCCCEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHH
AMSGRPPYAWEPDKGAYIGVMKRSGDIKDIVWFRGDACYVFHIMNAWDDGHRITADVMQF
HHCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCEEEEEEEECCCCCCCEEEHHHHHC
DEPPLFPHPDGRPTDPVKSRARLCRWSFDLAGNTDRFTQTYLDDLTGEFPRIDDRRAGLA
CCCCCCCCCCCCCCCHHHHHHHHEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHCCCC
SRHGWYACANPDGPPFGALSGLAHVDCVGARRATYLLPDGDSLSEPVFVPRSPEAPEGDG
CCCCEEEECCCCCCCCHHHHCCHHEEEECCCCEEEECCCCCCCCCCEECCCCCCCCCCCC
WLLTVVWRAETNTSEIAVFGATEIGAGPIALVHLGHRVPDGFHGNWVGAA
EEEEEEEECCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MINGAHPAGQTRSGRNNLAPIPFECDAPILKITGELPRELNGTLYRNGPNPQFDSPGAHW
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHCCCEEEECCCCCCCCCCCCEE
FVGDGMLHAFHLDNGRASYRNRWVRTPKFEAERKAGRALFGGFGRKLADAPSDLTDGGVA
EECCCEEEEEEECCCCHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCC
NTNIISHAGKLLALEEAHLPTEIEPGTLATKGYQDFGGRLRGAFTAHPKTDPVTGELLFF
CCHHHHHCCCEEEEECCCCCCCCCCCCEEECCCHHHCCEEECEEECCCCCCCCCCEEEEE
GYNAAGPLTPALTYGTIDAAGQLTRLNRFEAPYASMVHDFIVTANHVLFPILPLTGSMQR
EECCCCCCCCEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHH
AMSGRPPYAWEPDKGAYIGVMKRSGDIKDIVWFRGDACYVFHIMNAWDDGHRITADVMQF
HHCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCEEEEEEEECCCCCCCEEEHHHHHC
DEPPLFPHPDGRPTDPVKSRARLCRWSFDLAGNTDRFTQTYLDDLTGEFPRIDDRRAGLA
CCCCCCCCCCCCCCCHHHHHHHHEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHCCCC
SRHGWYACANPDGPPFGALSGLAHVDCVGARRATYLLPDGDSLSEPVFVPRSPEAPEGDG
CCCCEEEECCCCCCCCHHHHCCHHEEEECCCCEEEECCCCCCCCCCEECCCCCCCCCCCC
WLLTVVWRAETNTSEIAVFGATEIGAGPIALVHLGHRVPDGFHGNWVGAA
EEEEEEEECCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]