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The map label for this gene is fliD [H]

Identifier: 146341772

GI number: 146341772

Start: 5089812

End: 5091383

Strand: Reverse

Name: fliD [H]

Synonym: BRADO4889

Alternate gene names: 146341772

Gene position: 5091383-5089812 (Counterclockwise)

Preceding gene: 146341773

Following gene: 146341771

Centisome position: 68.28

GC content: 62.09

Gene sequence:

>1572_bases
GTGAACGCCAAGCTCTCCCAGGCGACGCAGATCTCGACCAAAATCACCGCCAACGAAGCCAAGATCACGGCCTATCAGAC
GCTGCAGACGTCGCTGAAAACGTTGTCATCCGGACTATCGTCGCTTGCGACCGCCGTGGTGAACTCGCTTGCCACCAACG
TCTTCGCGACGCGCGCGGCGACGATCAGCGCGACCGGCGATGTCAGCGCCTCCTCGGCGCTGTCGATGTCCGTCAACAAC
GGTGCGGCGACCGGAAGCCATACGCTGACCATCAGCCAGATCGCGACGGCGCAGAAGGTGACGGGGACGGCGCAGTCCAG
CCAGACCACGGCGCTCGGCTATTCCGGAACGTTTTCGCTCGGCCTGTCCGGCGGCAGCACCGCGGACATCAGCATCACCA
GCGACATGACCTTGCAGGACGTGGTCAGCGCGATCAATGCTCAGACCTCGACCACCGATGTCGCGGCGTCGATCGTCCAG
GTGTCGAGCGGATCGTATCAGCTGGTGCTCACGGGCACCAAGGATGCGGCCGACATCACCTATTCCAGCTCGTCGGGCGA
CGACATCCTCAACAAGCTCGGCGTCACAGACGGCTCGGGCGCCTTCTCCACCGTGCTGCAGACGGCGCAGGCCGCGCAGT
TCACCCTCGACGGCATCAGCCTCACGCGCGACACCAACGATATCACCGACGTGCTCAGCGGTGTGACCTTCGATCTGCTA
CAGGCGACGCCGTCCGGCACCACGCTCAACATCAGCATCGGCACCGACACCAGCCAGATCTCATCGGCCTTGCAGACCTT
TGTTACCAACTACAATGCATTCCGCGATGCCGTTCTGACACAGCAGACCACCAATTCCGACGGCACGGCCTCGTCCAGCG
CGGTGCTGTTCGGCGACGGCACCATGCGCCAGATCATGAACTCGCTCCAGAACGTGCTCGGAACCTCCGTCGGCGGTCTG
ACGATGGCCGATCTCGGTTTGTCGTTCAACGAGAAGAACGAGCTCGAGCTCGACACCGGCACGCTGTCGACGATCCTCAG
CACCAATCTGAGCGGCGTGACGACGCTGCTGTCTGCTCAGACCACGACATCGTCCAGCCAGCTCAGCGTCGTCAACACCG
GCACCTCGCCGCAATCGTTCACGCTCGATCTCACGGTGGATTCGTCGGGGAGCCTCACGGCCGCCTCGGTTGGCGGCGAC
AGTTCGCTGTTCACGATCACCGGCAACACCATCGTCGGGAACTCCGGCACGATCTACGCCGGCATGGCCTTCACCTATAC
CGGAACGACGTCGCAATCGATCACCGTGACCTCGACGCAGGGGCTTGCGACACAAATCTACCAGATTGCGAAAACCGCCT
CGTCCAGCAGCGGATCGCTTCAGACGTTGATCGACAATCTGACGACGCAGGACGATACGATGCAGTCCAAGGTCGACGAC
ATCAACAGCGCCGCGGCGACGTTCCAGACTCAGCTCACGGCGCAATACGCCAAGTACCAGGCCGCGATCGAGAGCGCCAA
CAACACGCTGACCTATCTGAAAGCACTCCTCAACCAGAGTTCGAGTAACTGA

Upstream 100 bases:

>100_bases
CTCGTCATCCTCCTCGTCGACGAGCTCTAGCAGCTCGCTGACCACCTCGGGTACGAGCACCACCAGCACGATCGACTGGA
CTGCGCTGATCCAGTCGGCG

Downstream 100 bases:

>100_bases
TGACCCAGAGTTCGATGGCGCAATTGGCAAGTCAGGCCTACCGCGGCGCTGCTGTCGCAGTACCGCCGCTGCGGGCCGTG
ATCATGCTGCTGAACGGCGC

Product: putative flagellar hook-associated protein FlgD

Products: NA

Alternate protein names: HAP2; Filament cap protein [H]

Number of amino acids: Translated: 523; Mature: 523

Protein sequence:

>523_residues
MNAKLSQATQISTKITANEAKITAYQTLQTSLKTLSSGLSSLATAVVNSLATNVFATRAATISATGDVSASSALSMSVNN
GAATGSHTLTISQIATAQKVTGTAQSSQTTALGYSGTFSLGLSGGSTADISITSDMTLQDVVSAINAQTSTTDVAASIVQ
VSSGSYQLVLTGTKDAADITYSSSSGDDILNKLGVTDGSGAFSTVLQTAQAAQFTLDGISLTRDTNDITDVLSGVTFDLL
QATPSGTTLNISIGTDTSQISSALQTFVTNYNAFRDAVLTQQTTNSDGTASSSAVLFGDGTMRQIMNSLQNVLGTSVGGL
TMADLGLSFNEKNELELDTGTLSTILSTNLSGVTTLLSAQTTTSSSQLSVVNTGTSPQSFTLDLTVDSSGSLTAASVGGD
SSLFTITGNTIVGNSGTIYAGMAFTYTGTTSQSITVTSTQGLATQIYQIAKTASSSSGSLQTLIDNLTTQDDTMQSKVDD
INSAAATFQTQLTAQYAKYQAAIESANNTLTYLKALLNQSSSN

Sequences:

>Translated_523_residues
MNAKLSQATQISTKITANEAKITAYQTLQTSLKTLSSGLSSLATAVVNSLATNVFATRAATISATGDVSASSALSMSVNN
GAATGSHTLTISQIATAQKVTGTAQSSQTTALGYSGTFSLGLSGGSTADISITSDMTLQDVVSAINAQTSTTDVAASIVQ
VSSGSYQLVLTGTKDAADITYSSSSGDDILNKLGVTDGSGAFSTVLQTAQAAQFTLDGISLTRDTNDITDVLSGVTFDLL
QATPSGTTLNISIGTDTSQISSALQTFVTNYNAFRDAVLTQQTTNSDGTASSSAVLFGDGTMRQIMNSLQNVLGTSVGGL
TMADLGLSFNEKNELELDTGTLSTILSTNLSGVTTLLSAQTTTSSSQLSVVNTGTSPQSFTLDLTVDSSGSLTAASVGGD
SSLFTITGNTIVGNSGTIYAGMAFTYTGTTSQSITVTSTQGLATQIYQIAKTASSSSGSLQTLIDNLTTQDDTMQSKVDD
INSAAATFQTQLTAQYAKYQAAIESANNTLTYLKALLNQSSSN
>Mature_523_residues
MNAKLSQATQISTKITANEAKITAYQTLQTSLKTLSSGLSSLATAVVNSLATNVFATRAATISATGDVSASSALSMSVNN
GAATGSHTLTISQIATAQKVTGTAQSSQTTALGYSGTFSLGLSGGSTADISITSDMTLQDVVSAINAQTSTTDVAASIVQ
VSSGSYQLVLTGTKDAADITYSSSSGDDILNKLGVTDGSGAFSTVLQTAQAAQFTLDGISLTRDTNDITDVLSGVTFDLL
QATPSGTTLNISIGTDTSQISSALQTFVTNYNAFRDAVLTQQTTNSDGTASSSAVLFGDGTMRQIMNSLQNVLGTSVGGL
TMADLGLSFNEKNELELDTGTLSTILSTNLSGVTTLLSAQTTTSSSQLSVVNTGTSPQSFTLDLTVDSSGSLTAASVGGD
SSLFTITGNTIVGNSGTIYAGMAFTYTGTTSQSITVTSTQGLATQIYQIAKTASSSSGSLQTLIDNLTTQDDTMQSKVDD
INSAAATFQTQLTAQYAKYQAAIESANNTLTYLKALLNQSSSN

Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the

COG id: COG1345

COG function: function code N; Flagellar capping protein

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliD family [H]

Homologues:

Organism=Escherichia coli, GI1788233, Length=366, Percent_Identity=28.6885245901639, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010810
- InterPro:   IPR010809
- InterPro:   IPR003481 [H]

Pfam domain/function: PF07196 Flagellin_IN; PF07195 FliD_C; PF02465 FliD_N [H]

EC number: NA

Molecular weight: Translated: 53258; Mature: 53258

Theoretical pI: Translated: 3.94; Mature: 3.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAKLSQATQISTKITANEAKITAYQTLQTSLKTLSSGLSSLATAVVNSLATNVFATRAA
CCCCCCCHHEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
TISATGDVSASSALSMSVNNGAATGSHTLTISQIATAQKVTGTAQSSQTTALGYSGTFSL
EEEECCCCCCCCEEEEEECCCCCCCCCEEEHHHHHHHHHHCCCCCCCCEEEEECCCEEEE
GLSGGSTADISITSDMTLQDVVSAINAQTSTTDVAASIVQVSSGSYQLVLTGTKDAADIT
ECCCCCEEEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHEECCCCEEEEEECCCCCCEEE
YSSSSGDDILNKLGVTDGSGAFSTVLQTAQAAQFTLDGISLTRDTNDITDVLSGVTFDLL
ECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHEEEECCEEEECCCHHHHHHHCCCCEEHH
QATPSGTTLNISIGTDTSQISSALQTFVTNYNAFRDAVLTQQTTNSDGTASSSAVLFGDG
HCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCC
TMRQIMNSLQNVLGTSVGGLTMADLGLSFNEKNELELDTGTLSTILSTNLSGVTTLLSAQ
HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEECCCHHHHHHHCCCCHHHHHHCCC
TTTSSSQLSVVNTGTSPQSFTLDLTVDSSGSLTAASVGGDSSLFTITGNTIVGNSGTIYA
CCCCCCEEEEEECCCCCCEEEEEEEECCCCCEEEEECCCCCEEEEEECCEEECCCCEEEE
GMAFTYTGTTSQSITVTSTQGLATQIYQIAKTASSSSGSLQTLIDNLTTQDDTMQSKVDD
EEEEEEECCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHH
INSAAATFQTQLTAQYAKYQAAIESANNTLTYLKALLNQSSSN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNAKLSQATQISTKITANEAKITAYQTLQTSLKTLSSGLSSLATAVVNSLATNVFATRAA
CCCCCCCHHEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
TISATGDVSASSALSMSVNNGAATGSHTLTISQIATAQKVTGTAQSSQTTALGYSGTFSL
EEEECCCCCCCCEEEEEECCCCCCCCCEEEHHHHHHHHHHCCCCCCCCEEEEECCCEEEE
GLSGGSTADISITSDMTLQDVVSAINAQTSTTDVAASIVQVSSGSYQLVLTGTKDAADIT
ECCCCCEEEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHEECCCCEEEEEECCCCCCEEE
YSSSSGDDILNKLGVTDGSGAFSTVLQTAQAAQFTLDGISLTRDTNDITDVLSGVTFDLL
ECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHEEEECCEEEECCCHHHHHHHCCCCEEHH
QATPSGTTLNISIGTDTSQISSALQTFVTNYNAFRDAVLTQQTTNSDGTASSSAVLFGDG
HCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCC
TMRQIMNSLQNVLGTSVGGLTMADLGLSFNEKNELELDTGTLSTILSTNLSGVTTLLSAQ
HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEECCCHHHHHHHCCCCHHHHHHCCC
TTTSSSQLSVVNTGTSPQSFTLDLTVDSSGSLTAASVGGDSSLFTITGNTIVGNSGTIYA
CCCCCCEEEEEECCCCCCEEEEEEEECCCCCEEEEECCCCCEEEEEECCEEECCCCEEEE
GMAFTYTGTTSQSITVTSTQGLATQIYQIAKTASSSSGSLQTLIDNLTTQDDTMQSKVDD
EEEEEEECCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHH
INSAAATFQTQLTAQYAKYQAAIESANNTLTYLKALLNQSSSN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2193164; 11677609; 1527488; 9878359; 11118149 [H]