Click here to switch to the map view.

The map label for this gene is flgD [H]

Identifier: 146341768

GI number: 146341768

Start: 5087873

End: 5088529

Strand: Reverse

Name: flgD [H]

Synonym: BRADO4885

Alternate gene names: 146341768

Gene position: 5088529-5087873 (Counterclockwise)

Preceding gene: 146341770

Following gene: 146341767

Centisome position: 68.24

GC content: 60.88

Gene sequence:

>657_bases
ATGACCATTACTGCGACAAGCTCGTCGACTGCGACCACGACGTCCTCGACGTCGTCTTCCAGCGGCACGCTGAGCTCGAC
CGACTTCCTTCAGCTGCTCGTGAGCGAGCTGCAGAACCAGGATCCCCTCAATGCGACCAGCGTGACCGATTTCGTCAATC
AGATGACATCCTATGCGAACTACACGTCGCAGCAGTCGCTCAACACGAGCATGAACTCGCTGGCCAGCTCGTTCTCGAGC
CTGGTGACACTGAACTCCGTCAACTACATCGGCCATACCGTCGAGGCCAAGAGCGACACGGCGCTGCTCTCCAACGGCTC
GGCCACGTTCGGCTACTCGCTGTCGTCAGCCGCGTCGAACGTCTCGATCTCGATCAAGGATTCGTCGGGGAGCACGGTCT
GGACCGGCACCGGGACCGGCAACAAGGGCTCCAATTCGATCACCTGGGACGGCAAGGATTCCGGCGGCAACCAGCTCAGC
GACGGCGGCCAATACACGATTTCCGTCACGGCGACCGACTCGAGCGGAAATTCCGTTCTCAACTACACGACGGTCACCGG
CACGGTGACCGGGATCGACACCTCGACCAGCACGCCTTCGCTGACCGTCAACGGTGTTGCCGTCAGCGCCAGCAACATCA
TCGGCGTCACTTCCTAA

Upstream 100 bases:

>100_bases
CTGGATTCGCTCTTCCGGCCGTTTGATCAGCAAACGCCTTCATGACCCCTCGTGGTCGTGATGTCCCGCCGCCGCTCGCG
GCGAGAGCCGGAGTTCTGCC

Downstream 100 bases:

>100_bases
TTCTGTCATTCGGAGTACAAGCATGAGTCTTTCCGGAGCTCTCTCATCGGCAATCTCGGCGCTCAACGCGCAGAGCTCGT
CGCTCGCCATGATCAGCGAC

Product: putative basal-body rod modification protein flgD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MTITATSSSTATTTSSTSSSSGTLSSTDFLQLLVSELQNQDPLNATSVTDFVNQMTSYANYTSQQSLNTSMNSLASSFSS
LVTLNSVNYIGHTVEAKSDTALLSNGSATFGYSLSSAASNVSISIKDSSGSTVWTGTGTGNKGSNSITWDGKDSGGNQLS
DGGQYTISVTATDSSGNSVLNYTTVTGTVTGIDTSTSTPSLTVNGVAVSASNIIGVTS

Sequences:

>Translated_218_residues
MTITATSSSTATTTSSTSSSSGTLSSTDFLQLLVSELQNQDPLNATSVTDFVNQMTSYANYTSQQSLNTSMNSLASSFSS
LVTLNSVNYIGHTVEAKSDTALLSNGSATFGYSLSSAASNVSISIKDSSGSTVWTGTGTGNKGSNSITWDGKDSGGNQLS
DGGQYTISVTATDSSGNSVLNYTTVTGTVTGIDTSTSTPSLTVNGVAVSASNIIGVTS
>Mature_217_residues
TITATSSSTATTTSSTSSSSGTLSSTDFLQLLVSELQNQDPLNATSVTDFVNQMTSYANYTSQQSLNTSMNSLASSFSSL
VTLNSVNYIGHTVEAKSDTALLSNGSATFGYSLSSAASNVSISIKDSSGSTVWTGTGTGNKGSNSITWDGKDSGGNQLSD
GGQYTISVTATDSSGNSVLNYTTVTGTVTGIDTSTSTPSLTVNGVAVSASNIIGVTS

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=180, Percent_Identity=30.5555555555556, Blast_Score=74, Evalue=9e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 22001; Mature: 21869

Theoretical pI: Translated: 3.84; Mature: 3.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITATSSSTATTTSSTSSSSGTLSSTDFLQLLVSELQNQDPLNATSVTDFVNQMTSYAN
CEEEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
YTSQQSLNTSMNSLASSFSSLVTLNSVNYIGHTVEAKSDTALLSNGSATFGYSLSSAASN
CCCHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEECCCCEEEEECCCCEECEEECCCCCE
VSISIKDSSGSTVWTGTGTGNKGSNSITWDGKDSGGNQLSDGGQYTISVTATDSSGNSVL
EEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCEEE
NYTTVTGTVTGIDTSTSTPSLTVNGVAVSASNIIGVTS
EEEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEECC
>Mature Secondary Structure 
TITATSSSTATTTSSTSSSSGTLSSTDFLQLLVSELQNQDPLNATSVTDFVNQMTSYAN
EEEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
YTSQQSLNTSMNSLASSFSSLVTLNSVNYIGHTVEAKSDTALLSNGSATFGYSLSSAASN
CCCHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEECCCCEEEEECCCCEECEEECCCCCE
VSISIKDSSGSTVWTGTGTGNKGSNSITWDGKDSGGNQLSDGGQYTISVTATDSSGNSVL
EEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCEEE
NYTTVTGTVTGIDTSTSTPSLTVNGVAVSASNIIGVTS
EEEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]