| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is comEC [H]
Identifier: 146341051
GI number: 146341051
Start: 4314200
End: 4316503
Strand: Reverse
Name: comEC [H]
Synonym: BRADO4122
Alternate gene names: 146341051
Gene position: 4316503-4314200 (Counterclockwise)
Preceding gene: 146341053
Following gene: 146341042
Centisome position: 57.89
GC content: 71.74
Gene sequence:
>2304_bases GTGGTGTGGGCGATGGCGGGGCCGGAGCAGCCGCCGGGGTGGCGTCACGGGATCGCGGGCGTGATGGCCGAGGTCTGGCC GCCGCGCGGCGCGCTGGCCGGCGGCTGGCCCGCAATCGGCTCCGGCATCGGATCGTCCCTTGGTGTCAGGCTTAAGAGCT GGGCGCGCGACGAGGCCGGGGCAGGGCGGCTGCTGCCCTGGGTTCCCGTCGCGTTCGGCGCCGGCATCGCGCTGTATTTC TCTGCCGATCACGAGCCGTTGCTGTGGGTGAGCGTGGCCCTGGCGCTCGCGCTGGGCGCGGCCGCTGTGCTCATGCGCCG GCACCCGTTGTTTCCGGCGGCGGTGATGATCGCAGCCACGGCGTCCGGCTTTGCCGTCGCCACCGTGAAGACGGCACTGG TGGCGCATCCGCTGCTGGCGCGACCGCTGTATTCCGTCTCGCTCTCCGGCTTCGTCGAGGCGCGCGATATCCGCGAGCGC AGCGACCGCATCGTTTTGCGCGTGACGTCAATGGAGAGTCAGCGCAGCAGCGTGGCTCTTGCGCGCGTCCGGCTCGCGGT GCGCAAGGGCGCCGCGCCCGATGTCGGCAGCTTCGTGCAGCTGAAGGCACGCCTGTTGCCGCCGCTCGCGCCGGTGCGTC CCGGGTCCTACGACTTTGCCCGCGACATGTTCTTCCAGGGCATCGGCGCCTCCGGCTTCGTGATGGGCGCCATCACCGTC GTGACGCCGCCGCAGGCGGCCGGCGTCGGCCTGCGCTATGCGGCGGCGATGCAGGACCTGCGCGATGTGATCGACGCCCG CATCCGCGCGCGCCTTGCGGGCGACGAGCGCGCGATTGCGACTGCGCTTCTGACTGGCCGACGCGACGCCGTCACGCCCG ACGTCAACGACGCGATGTTCATCTCCGGCCTCGGCCATGTGCTGTCGATCTCCGGTTATCACATGGCCGTCGTCGCCGGC GTCGTGTTCTTCGCCGTGCGCGCGCTGCTCGCGCTGATCCCGGGCCTGACCGTCAGCCATCCGATCAAGAAATGGGCGGC CGCCGCGGCTTTGGCGGCCGCCGCGTTCTATCTGTTGCTGTCGGGCGCCGAGGTCGCGACGCAGAGATCCTTCTTCATGA CGGCGGTGGTGCTCATCGCCGTCATGGTCGACCGCCGCGCCGTCACCTTCCGCACGCTCGCTGTGGCCGCCATGATCGTG CTGATCGCCGCTCCGGAGGCGCTGGTGCATCCGAGCTTTCAGATGTCGTTCGCGGCCACCCTCGGCCTCGTCGCGCTGGT ACAGTTCGGCCTGCCCAAACTGTTCGCGACGCCGGATTCCTCGACCGCGCAGCGCGTCGCGCTGTGGGGCGGCCGCGAGC TCTCGATGCTGCTCCTGGCCTCGCTGATCGCCGGCCTCGCCACCACGCCCTATGCCGCATTCCACTTTCATCGCATCACG CCCTACGGCCTGCTCGCCAACCTCGCGGCGATGCCGGTGGTCTCGGCGGTGGTGATGCCCGCCGGGCTGCTCGGCCTGCT GTTTGCGCCGTTCGGGCTCGATGGCTTGTGGTGGACCGTGATGGGCTGGGGCATCGACTGGATGATCGCCGTGACGCGCT GGGTCGCCGCGCTGCCGGGCGCGGTCGGGCGCATCACGGCCTTCGGCATCGGCCCGCTGATCGTGTCGAGTTTCGGCCTC GTCCTGATCGGCCTGCTCAGGACGCCGCTGCGCTGGTCCGGCGCGGCGGTGCTCGCCATCGCGGCCGCATGGGCCGCCGC GACGCCGCAGCCCGACATTCTCGTCTCCGGCGATGGCCGCGCGGTCGCGGTGCGCGGCCGCGACGGGCTTCTGCATGTGA TGCGCAACGGCAAGGACGTGTTCGTCACCCGCGAGTGGCTCGCCGCCGATGCCGATGCGCGGCTGCCGGCCGATTCCTCG CTCGGCCATGGCGTGTCCTGCGACGATTCGGGCTGCGTCCTGGCGCTGGCCGATGGCCGCCTCGTTGCGCTCACCCTGCG CGCGGATGCGCTCGCCGATGATTGCGCCCGTGCGGCGCTGGTGGTGACGGCGCGCGCCGCGCCATCATCCTGCGCGGCCG CTGTCGTCGACCGCCCGCGCCTGCAGCAGCAGGGCGCGTTGATGCTGGTCGCGCGCGACAAGGGATTCGCCGTCGTGCCC GTGCGGGCCGACGGCACCGACCGCCCGTGGTGGCCGGCGCCCGCTGAGGCCGGGGAGTTCGAGACCACGTTGACTCCGCG CACGCCGGGACCGCGAGCGCAGGATGCGACACCGCCGGAGACGGAGCAGGGCGGAGACGACTAA
Upstream 100 bases:
>100_bases CCAGCGGAGCTGCGTGTGCAGAATGCCAGGATTCGCGTTCCGTTCTGCTAGGCGGGCCCGCGCAGCCTCAGGTAGCCTCC ACGGTCAGTGCGGATAGCGG
Downstream 100 bases:
>100_bases TTAGTCCGGACGAGCCGGTTCAGATCGGTCGCTTCAAGCCGATACGCATGGCATCCAACTGGCATCTGGAACAGCGGAGA CGCTGCAATCCGCAGGCCGG
Product: putative ComEC/Rec2 family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 767; Mature: 767
Protein sequence:
>767_residues MVWAMAGPEQPPGWRHGIAGVMAEVWPPRGALAGGWPAIGSGIGSSLGVRLKSWARDEAGAGRLLPWVPVAFGAGIALYF SADHEPLLWVSVALALALGAAAVLMRRHPLFPAAVMIAATASGFAVATVKTALVAHPLLARPLYSVSLSGFVEARDIRER SDRIVLRVTSMESQRSSVALARVRLAVRKGAAPDVGSFVQLKARLLPPLAPVRPGSYDFARDMFFQGIGASGFVMGAITV VTPPQAAGVGLRYAAAMQDLRDVIDARIRARLAGDERAIATALLTGRRDAVTPDVNDAMFISGLGHVLSISGYHMAVVAG VVFFAVRALLALIPGLTVSHPIKKWAAAAALAAAAFYLLLSGAEVATQRSFFMTAVVLIAVMVDRRAVTFRTLAVAAMIV LIAAPEALVHPSFQMSFAATLGLVALVQFGLPKLFATPDSSTAQRVALWGGRELSMLLLASLIAGLATTPYAAFHFHRIT PYGLLANLAAMPVVSAVVMPAGLLGLLFAPFGLDGLWWTVMGWGIDWMIAVTRWVAALPGAVGRITAFGIGPLIVSSFGL VLIGLLRTPLRWSGAAVLAIAAAWAAATPQPDILVSGDGRAVAVRGRDGLLHVMRNGKDVFVTREWLAADADARLPADSS LGHGVSCDDSGCVLALADGRLVALTLRADALADDCARAALVVTARAAPSSCAAAVVDRPRLQQQGALMLVARDKGFAVVP VRADGTDRPWWPAPAEAGEFETTLTPRTPGPRAQDATPPETEQGGDD
Sequences:
>Translated_767_residues MVWAMAGPEQPPGWRHGIAGVMAEVWPPRGALAGGWPAIGSGIGSSLGVRLKSWARDEAGAGRLLPWVPVAFGAGIALYF SADHEPLLWVSVALALALGAAAVLMRRHPLFPAAVMIAATASGFAVATVKTALVAHPLLARPLYSVSLSGFVEARDIRER SDRIVLRVTSMESQRSSVALARVRLAVRKGAAPDVGSFVQLKARLLPPLAPVRPGSYDFARDMFFQGIGASGFVMGAITV VTPPQAAGVGLRYAAAMQDLRDVIDARIRARLAGDERAIATALLTGRRDAVTPDVNDAMFISGLGHVLSISGYHMAVVAG VVFFAVRALLALIPGLTVSHPIKKWAAAAALAAAAFYLLLSGAEVATQRSFFMTAVVLIAVMVDRRAVTFRTLAVAAMIV LIAAPEALVHPSFQMSFAATLGLVALVQFGLPKLFATPDSSTAQRVALWGGRELSMLLLASLIAGLATTPYAAFHFHRIT PYGLLANLAAMPVVSAVVMPAGLLGLLFAPFGLDGLWWTVMGWGIDWMIAVTRWVAALPGAVGRITAFGIGPLIVSSFGL VLIGLLRTPLRWSGAAVLAIAAAWAAATPQPDILVSGDGRAVAVRGRDGLLHVMRNGKDVFVTREWLAADADARLPADSS LGHGVSCDDSGCVLALADGRLVALTLRADALADDCARAALVVTARAAPSSCAAAVVDRPRLQQQGALMLVARDKGFAVVP VRADGTDRPWWPAPAEAGEFETTLTPRTPGPRAQDATPPETEQGGDD >Mature_767_residues MVWAMAGPEQPPGWRHGIAGVMAEVWPPRGALAGGWPAIGSGIGSSLGVRLKSWARDEAGAGRLLPWVPVAFGAGIALYF SADHEPLLWVSVALALALGAAAVLMRRHPLFPAAVMIAATASGFAVATVKTALVAHPLLARPLYSVSLSGFVEARDIRER SDRIVLRVTSMESQRSSVALARVRLAVRKGAAPDVGSFVQLKARLLPPLAPVRPGSYDFARDMFFQGIGASGFVMGAITV VTPPQAAGVGLRYAAAMQDLRDVIDARIRARLAGDERAIATALLTGRRDAVTPDVNDAMFISGLGHVLSISGYHMAVVAG VVFFAVRALLALIPGLTVSHPIKKWAAAAALAAAAFYLLLSGAEVATQRSFFMTAVVLIAVMVDRRAVTFRTLAVAAMIV LIAAPEALVHPSFQMSFAATLGLVALVQFGLPKLFATPDSSTAQRVALWGGRELSMLLLASLIAGLATTPYAAFHFHRIT PYGLLANLAAMPVVSAVVMPAGLLGLLFAPFGLDGLWWTVMGWGIDWMIAVTRWVAALPGAVGRITAFGIGPLIVSSFGL VLIGLLRTPLRWSGAAVLAIAAAWAAATPQPDILVSGDGRAVAVRGRDGLLHVMRNGKDVFVTREWLAADADARLPADSS LGHGVSCDDSGCVLALADGRLVALTLRADALADDCARAALVVTARAAPSSCAAAVVDRPRLQQQGALMLVARDKGFAVVP VRADGTDRPWWPAPAEAGEFETTLTPRTPGPRAQDATPPETEQGGDD
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 80222; Mature: 80222
Theoretical pI: Translated: 10.15; Mature: 10.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVWAMAGPEQPPGWRHGIAGVMAEVWPPRGALAGGWPAIGSGIGSSLGVRLKSWARDEAG CEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHHHCCCCCC AGRLLPWVPVAFGAGIALYFSADHEPLLWVSVALALALGAAAVLMRRHPLFPAAVMIAAT CCCCCCCHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC ASGFAVATVKTALVAHPLLARPLYSVSLSGFVEARDIRERSDRIVLRVTSMESQRSSVAL CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH ARVRLAVRKGAAPDVGSFVQLKARLLPPLAPVRPGSYDFARDMFFQGIGASGFVMGAITV HHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEE VTPPQAAGVGLRYAAAMQDLRDVIDARIRARLAGDERAIATALLTGRRDAVTPDVNDAMF ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHH ISGLGHVLSISGYHMAVVAGVVFFAVRALLALIPGLTVSHPIKKWAAAAALAAAAFYLLL HHCCCHHHEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH SGAEVATQRSFFMTAVVLIAVMVDRRAVTFRTLAVAAMIVLIAAPEALVHPSFQMSFAAT CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHH LGLVALVQFGLPKLFATPDSSTAQRVALWGGRELSMLLLASLIAGLATTPYAAFHFHRIT HHHHHHHHHCCCCEEECCCCCCHHEEEEECCCHHHHHHHHHHHHHHHCCCCHHHEEECCC PYGLLANLAAMPVVSAVVMPAGLLGLLFAPFGLDGLWWTVMGWGIDWMIAVTRWVAALPG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCC AVGRITAFGIGPLIVSSFGLVLIGLLRTPLRWSGAAVLAIAAAWAAATPQPDILVSGDGR CHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCC AVAVRGRDGLLHVMRNGKDVFVTREWLAADADARLPADSSLGHGVSCDDSGCVLALADGR EEEEECCCCHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCE LVALTLRADALADDCARAALVVTARAAPSSCAAAVVDRPRLQQQGALMLVARDKGFAVVP EEEEEEEHHHHHHHHHHEEEEEEECCCCCHHHHHHHCCCCHHHCCCEEEEEECCCEEEEE VRADGTDRPWWPAPAEAGEFETTLTPRTPGPRAQDATPPETEQGGDD EECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MVWAMAGPEQPPGWRHGIAGVMAEVWPPRGALAGGWPAIGSGIGSSLGVRLKSWARDEAG CEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHHHCCCCCC AGRLLPWVPVAFGAGIALYFSADHEPLLWVSVALALALGAAAVLMRRHPLFPAAVMIAAT CCCCCCCHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC ASGFAVATVKTALVAHPLLARPLYSVSLSGFVEARDIRERSDRIVLRVTSMESQRSSVAL CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH ARVRLAVRKGAAPDVGSFVQLKARLLPPLAPVRPGSYDFARDMFFQGIGASGFVMGAITV HHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEE VTPPQAAGVGLRYAAAMQDLRDVIDARIRARLAGDERAIATALLTGRRDAVTPDVNDAMF ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHH ISGLGHVLSISGYHMAVVAGVVFFAVRALLALIPGLTVSHPIKKWAAAAALAAAAFYLLL HHCCCHHHEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH SGAEVATQRSFFMTAVVLIAVMVDRRAVTFRTLAVAAMIVLIAAPEALVHPSFQMSFAAT CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHH LGLVALVQFGLPKLFATPDSSTAQRVALWGGRELSMLLLASLIAGLATTPYAAFHFHRIT HHHHHHHHHCCCCEEECCCCCCHHEEEEECCCHHHHHHHHHHHHHHHCCCCHHHEEECCC PYGLLANLAAMPVVSAVVMPAGLLGLLFAPFGLDGLWWTVMGWGIDWMIAVTRWVAALPG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCC AVGRITAFGIGPLIVSSFGLVLIGLLRTPLRWSGAAVLAIAAAWAAATPQPDILVSGDGR CHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCC AVAVRGRDGLLHVMRNGKDVFVTREWLAADADARLPADSSLGHGVSCDDSGCVLALADGR EEEEECCCCHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCE LVALTLRADALADDCARAALVVTARAAPSSCAAAVVDRPRLQQQGALMLVARDKGFAVVP EEEEEEEHHHHHHHHHHEEEEEEECCCCCHHHHHHHCCCCHHHCCCEEEEEECCCEEEEE VRADGTDRPWWPAPAEAGEFETTLTPRTPGPRAQDATPPETEQGGDD EECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]