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The map label for this gene is ydcN [C]

Identifier: 146341034

GI number: 146341034

Start: 4295087

End: 4295653

Strand: Direct

Name: ydcN [C]

Synonym: BRADO4105

Alternate gene names: 146341034

Gene position: 4295087-4295653 (Clockwise)

Preceding gene: 146341028

Following gene: 146341035

Centisome position: 57.6

GC content: 68.43

Gene sequence:

>567_bases
ATGGATCAAACAATAGAAGATTTCAGCCAACGTCTTGCCCGGCGGCTGCAGCTCGAGCGTGACAGCCGCGGCTGGTCGCT
GGCCGACCTTGCCGAGCGCTCCGGCGTCTCCAAAGCCACCATCAGCAAGATCGAGCGCGCCGAGGTCAGCCCCACGGCGG
TGGTGCTGGTTAAGCTCGCCAGCGCCTTCGATCTCACCCTCGCCGGCCTGATGCTGCGCGCCGAAGCCCAATCGGAGCGG
CTGTCGAAGGCCGAGGAGCAGCCGGTCTGGCGCGATCCCGACACCGACTACCTCAGGCGCCAAGTCTACCTCCGGCCGGA
CCATCCGATCGAGCTGGTGACGGTCGAGATGCCGGCCCGCCGCAGCGTGACGCTGCCGGCCTCCTCCTACATCCACATCC
GCCAGCTCGTCTGGGTGCAGAGCGGCCGCCTGACGATCACCGAGGGCGCGGAGCGCCACGAGCTCGGCCCCGGCGACTGC
CTCGGCTTCGGCCCGCCGATCGACACCACCTTCGCCAACGAGACGGACGCGGCTTGCGTCTACGTCGTCGCCCTTGCCCG
GAGTTGA

Upstream 100 bases:

>100_bases
ACGCCACCCCGCAGATAATCGCACGCGCGCTTCGCACAAGCGCTGTGGCAGAGCCCCGAGGCGCCTTGCTGGCGCGTCCA
ATTTCTATTATTAGAGACGT

Downstream 100 bases:

>100_bases
GAATGAGCCCGATCCGAATCGAACCCCTGACCGACACGCCGGAGAGTCGCGGCGCGCTGAGTGCGATGCTGATCGAAACG
GTCGCGCATGGCGGCTCGGT

Product: transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator Protein; Helix-Turn-Helix Domain Protein; Xre Family xin-Antitoxin System Antitoxin Component; Transcription Regulator Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; Transcriptional Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Family Protein; Transcriptional Regulator With Cupin 2 Conserved Barrel; Transcriptional Regulator Protein LacI Family; HTH-Type Transcriptional Regulatory Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Transcriptional Regulatory Protein With Hth Domain

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MDQTIEDFSQRLARRLQLERDSRGWSLADLAERSGVSKATISKIERAEVSPTAVVLVKLASAFDLTLAGLMLRAEAQSER
LSKAEEQPVWRDPDTDYLRRQVYLRPDHPIELVTVEMPARRSVTLPASSYIHIRQLVWVQSGRLTITEGAERHELGPGDC
LGFGPPIDTTFANETDAACVYVVALARS

Sequences:

>Translated_188_residues
MDQTIEDFSQRLARRLQLERDSRGWSLADLAERSGVSKATISKIERAEVSPTAVVLVKLASAFDLTLAGLMLRAEAQSER
LSKAEEQPVWRDPDTDYLRRQVYLRPDHPIELVTVEMPARRSVTLPASSYIHIRQLVWVQSGRLTITEGAERHELGPGDC
LGFGPPIDTTFANETDAACVYVVALARS
>Mature_188_residues
MDQTIEDFSQRLARRLQLERDSRGWSLADLAERSGVSKATISKIERAEVSPTAVVLVKLASAFDLTLAGLMLRAEAQSER
LSKAEEQPVWRDPDTDYLRRQVYLRPDHPIELVTVEMPARRSVTLPASSYIHIRQLVWVQSGRLTITEGAERHELGPGDC
LGFGPPIDTTFANETDAACVYVVALARS

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20961; Mature: 20961

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQTIEDFSQRLARRLQLERDSRGWSLADLAERSGVSKATISKIERAEVSPTAVVLVKLA
CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHH
SAFDLTLAGLMLRAEAQSERLSKAEEQPVWRDPDTDYLRRQVYLRPDHPIELVTVEMPAR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHEEEECCCCCEEEEEEECCCC
RSVTLPASSYIHIRQLVWVQSGRLTITEGAERHELGPGDCLGFGPPIDTTFANETDAACV
CEEECCCCCHHHHHHHEEECCCCEEEECCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCEE
YVVALARS
EEEEECCC
>Mature Secondary Structure
MDQTIEDFSQRLARRLQLERDSRGWSLADLAERSGVSKATISKIERAEVSPTAVVLVKLA
CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHH
SAFDLTLAGLMLRAEAQSERLSKAEEQPVWRDPDTDYLRRQVYLRPDHPIELVTVEMPAR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHEEEECCCCCEEEEEEECCCC
RSVTLPASSYIHIRQLVWVQSGRLTITEGAERHELGPGDCLGFGPPIDTTFANETDAACV
CEEECCCCCHHHHHHHEEECCCCEEEECCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCEE
YVVALARS
EEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA