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The map label for this gene is ssb [H]

Identifier: 146340931

GI number: 146340931

Start: 4193724

End: 4194221

Strand: Reverse

Name: ssb [H]

Synonym: BRADO4002

Alternate gene names: 146340931

Gene position: 4194221-4193724 (Counterclockwise)

Preceding gene: 146340937

Following gene: 146340929

Centisome position: 56.25

GC content: 63.86

Gene sequence:

>498_bases
ATGGCGGGTAGCGTGAACAAGGTGATTCTGGTCGGCAATCTCGGCAAGGACCCGGAGATCCGGCGCACTCAGGATGGTCG
GCCGATCGCCAATCTGAGCATCGCGACGTCGGAGACGTGGCGGGACAAGAACACCGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGCGTGGTGATCTTCAATGAAGGTCTCTGCAAGGTCGCCGAGCAGTATCTCAAGAAGGGCTCCACGGTGTATATC
GAGGGCGCGCTGCAGACCCGCAAATGGACCGACCAGAGCGGCGTCGAGAAGTACTCGACCGAGGTCGTGCTGCAGGGCTT
CAATTCGACCCTGACGATGCTCGGTGGCCGCGGCGGTGGTGGTGGCGGCAATTTCGCCGACGACATGGGTGGCGGCGATT
TCGGCATGAGCAGCCCGTCGTCGTCAGCGCCGGCGCCGCGCCGTCCGATGGCGGCCGCGAGCCGCAACAGCGACATGGAC
GACGACATTCCGTTCTGA

Upstream 100 bases:

>100_bases
CGTATAGGGTCCGGCCCGAGAGGAAGGGTTAGCCACCTCGCGCCATGCGGCCGGTCGGCAGGACCGGTCCGGTGATTGAT
GAAAACCGCGGGAGAGTGTG

Downstream 100 bases:

>100_bases
ATCAGGGCGCGCCTTGAACCCGAAGGCGAAATGTCCGTGAAGCTGCAGGCGACGCGCTGTCGATCGTGCGTTGACGAGGA
GTGGCTTCGGGCGCTCACGG

Product: single-stranded DNA-binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MAGSVNKVILVGNLGKDPEIRRTQDGRPIANLSIATSETWRDKNTGERKEKTEWHRVVIFNEGLCKVAEQYLKKGSTVYI
EGALQTRKWTDQSGVEKYSTEVVLQGFNSTLTMLGGRGGGGGGNFADDMGGGDFGMSSPSSSAPAPRRPMAAASRNSDMD
DDIPF

Sequences:

>Translated_165_residues
MAGSVNKVILVGNLGKDPEIRRTQDGRPIANLSIATSETWRDKNTGERKEKTEWHRVVIFNEGLCKVAEQYLKKGSTVYI
EGALQTRKWTDQSGVEKYSTEVVLQGFNSTLTMLGGRGGGGGGNFADDMGGGDFGMSSPSSSAPAPRRPMAAASRNSDMD
DDIPF
>Mature_164_residues
AGSVNKVILVGNLGKDPEIRRTQDGRPIANLSIATSETWRDKNTGERKEKTEWHRVVIFNEGLCKVAEQYLKKGSTVYIE
GALQTRKWTDQSGVEKYSTEVVLQGFNSTLTMLGGRGGGGGGNFADDMGGGDFGMSSPSSSAPAPRRPMAAASRNSDMDD
DIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=108, Percent_Identity=36.1111111111111, Blast_Score=85, Evalue=4e-17,
Organism=Escherichia coli, GI1790494, Length=184, Percent_Identity=50.5434782608696, Blast_Score=159, Evalue=6e-41,
Organism=Drosophila melanogaster, GI85725234, Length=100, Percent_Identity=36, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24647376, Length=100, Percent_Identity=36, Blast_Score=75, Evalue=3e-14,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 17790; Mature: 17659

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGSVNKVILVGNLGKDPEIRRTQDGRPIANLSIATSETWRDKNTGERKEKTEWHRVVIF
CCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEE
NEGLCKVAEQYLKKGSTVYIEGALQTRKWTDQSGVEKYSTEVVLQGFNSTLTMLGGRGGG
CCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHEEECCCCEEEEECCCCCC
GGGNFADDMGGGDFGMSSPSSSAPAPRRPMAAASRNSDMDDDIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AGSVNKVILVGNLGKDPEIRRTQDGRPIANLSIATSETWRDKNTGERKEKTEWHRVVIF
CCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEE
NEGLCKVAEQYLKKGSTVYIEGALQTRKWTDQSGVEKYSTEVVLQGFNSTLTMLGGRGGG
CCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHEEECCCCEEEEECCCCCC
GGGNFADDMGGGDFGMSSPSSSAPAPRRPMAAASRNSDMDDDIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]