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The map label for this gene is ybbD [H]

Identifier: 146340887

GI number: 146340887

Start: 4133392

End: 4134741

Strand: Reverse

Name: ybbD [H]

Synonym: BRADO3953

Alternate gene names: 146340887

Gene position: 4134741-4133392 (Counterclockwise)

Preceding gene: 146340895

Following gene: 146340883

Centisome position: 55.45

GC content: 65.7

Gene sequence:

>1350_bases
ATGCTCGGGCGTATCAGGACGGTCGTCCTCTGGATTCTTGCTCTGCTCTTCATCGTCATCACGGTCAACAGCAACGAGCC
GTATCTCGTTCGCCTGCGCGGGGGTGGTCACGCCGCCTTGTTGATCATCGCTCTGGCCGCTCCGCTTCTGCTCCTGCTCG
GCGGGCGATGGCGGCACGGTCTCCCCGGGAAGATGCTTGTCCTCGCCTGGTGCATCCCGCTGATCGCGCTGACGTCGACG
CAGTTCATGTTCGCCTGGCGGAAGTATGAAACGTTCCGAACGGCTCCCGACGTCGCGCAATTGCTCGGGCGGCACTTCAT
GGTCGGCTATACGTCGTTGGAGGACGCTGCTGCGCTCGCGCGGCAGGGTTTGATCGTCGGCGTCTATGTGACCCACCACA
ATGTGCGAGGGCGAACGGCGGCCCAGCTGCAGGCCGACATTGCGCGGCTACAGGCCGAGCGGATCAGCGCCGGCCTGCCG
CCCTTGCTGGTCTCGGCCGACCAGGAGGGGGGCTCGGTTGCGCATTTGTCGCCGGCCGTGCCGAACATGCCCGGCCTTGC
GACGCTGGCCGATCTGCCGTCAGCGCGGCGCATGCAAGAGGCGTTCGAGATGGGGAAGAGCCAGGGTCGGTCCTTGGCAG
CCGCCGGCATCACCCTCAACTTGGCGCCGGTCGTCGATCTCCGCCCGCGCTGGACACACAACAGGTTTGATTTCCATACG
TTGATCAATCGCCGGGCGATCTCCAGCGATCCGGCCGTCGTGGCGGACATTGCGCTCGGTTATGTCCGCGGACTCGAAGC
GAGCGGCGTCCGTGCCGCCGTCAAGCACTTCCCCGGTCTCGGGCGCGTTGCGGCCGACACGCATCATTTCTCTGCCGAGC
TCGATACCTCAGCGGAAATTCTGGAACAGTCGGATTGGCTGGCGTTCCGCGGTGTGCTCGACAAGTCGGATGCAGCGATG
ATGGTGGGGCACGTGGTGGTCGATGCGATCGATCGCGAGCGCCCGGCGTCGCATTCGAAGGCCGTGCTCGACGGCCTGAT
CCGCGGGCGCTGGAACTACCAGGGCATCATCATCACCGACGATCTCGTGATGGGCGCGATCTACGGCCGGAACCTCTGCG
AGGCCGTGGTCGAGTCCCTCAGCGGCGGTGCCGACATCCTGCTGGTGGCTTATGACGGCACGCAAATCCATCGTGTGTTG
GCTTGCGCCAAAAGGGCGTTGGTGGACGGACGCATCGATCTGGAAGCCCTGCGCAGGAGCGACGAGCGCCTGGGGCGGTG
GATGCCGCGGGAGGACGGGACTGTCGCGGCGGATGCATCGAGTCCGCGCGCGCCGGCGCCAAGCAAGTAG

Upstream 100 bases:

>100_bases
GTTTGCAGAATTCGTGCAGGCGCGAGCCCGCCGCTGGCGCAGGCGGATCGGCATTGTTACGCAGAGGCCGTTGTTTCCTC
CGGACTCATCGGCTGCACAC

Downstream 100 bases:

>100_bases
TGCGTATGGATCGATCGGTCGATCAGAATCCGGTCACATTCGTCAGCGCGGGCCGTTGCCGGTCCAGTTGCGCCAGGCGA
CGTTTGAGAGGCTGCGCAAG

Product: putative beta-hexosaminidase

Products: N-acetylglucosamin; anhydro-N-acetylmuramic acid [C]

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 449; Mature: 449

Protein sequence:

>449_residues
MLGRIRTVVLWILALLFIVITVNSNEPYLVRLRGGGHAALLIIALAAPLLLLLGGRWRHGLPGKMLVLAWCIPLIALTST
QFMFAWRKYETFRTAPDVAQLLGRHFMVGYTSLEDAAALARQGLIVGVYVTHHNVRGRTAAQLQADIARLQAERISAGLP
PLLVSADQEGGSVAHLSPAVPNMPGLATLADLPSARRMQEAFEMGKSQGRSLAAAGITLNLAPVVDLRPRWTHNRFDFHT
LINRRAISSDPAVVADIALGYVRGLEASGVRAAVKHFPGLGRVAADTHHFSAELDTSAEILEQSDWLAFRGVLDKSDAAM
MVGHVVVDAIDRERPASHSKAVLDGLIRGRWNYQGIIITDDLVMGAIYGRNLCEAVVESLSGGADILLVAYDGTQIHRVL
ACAKRALVDGRIDLEALRRSDERLGRWMPREDGTVAADASSPRAPAPSK

Sequences:

>Translated_449_residues
MLGRIRTVVLWILALLFIVITVNSNEPYLVRLRGGGHAALLIIALAAPLLLLLGGRWRHGLPGKMLVLAWCIPLIALTST
QFMFAWRKYETFRTAPDVAQLLGRHFMVGYTSLEDAAALARQGLIVGVYVTHHNVRGRTAAQLQADIARLQAERISAGLP
PLLVSADQEGGSVAHLSPAVPNMPGLATLADLPSARRMQEAFEMGKSQGRSLAAAGITLNLAPVVDLRPRWTHNRFDFHT
LINRRAISSDPAVVADIALGYVRGLEASGVRAAVKHFPGLGRVAADTHHFSAELDTSAEILEQSDWLAFRGVLDKSDAAM
MVGHVVVDAIDRERPASHSKAVLDGLIRGRWNYQGIIITDDLVMGAIYGRNLCEAVVESLSGGADILLVAYDGTQIHRVL
ACAKRALVDGRIDLEALRRSDERLGRWMPREDGTVAADASSPRAPAPSK
>Mature_449_residues
MLGRIRTVVLWILALLFIVITVNSNEPYLVRLRGGGHAALLIIALAAPLLLLLGGRWRHGLPGKMLVLAWCIPLIALTST
QFMFAWRKYETFRTAPDVAQLLGRHFMVGYTSLEDAAALARQGLIVGVYVTHHNVRGRTAAQLQADIARLQAERISAGLP
PLLVSADQEGGSVAHLSPAVPNMPGLATLADLPSARRMQEAFEMGKSQGRSLAAAGITLNLAPVVDLRPRWTHNRFDFHT
LINRRAISSDPAVVADIALGYVRGLEASGVRAAVKHFPGLGRVAADTHHFSAELDTSAEILEQSDWLAFRGVLDKSDAAM
MVGHVVVDAIDRERPASHSKAVLDGLIRGRWNYQGIIITDDLVMGAIYGRNLCEAVVESLSGGADILLVAYDGTQIHRVL
ACAKRALVDGRIDLEALRRSDERLGRWMPREDGTVAADASSPRAPAPSK

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=238, Percent_Identity=29.4117647058824, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: NA

Molecular weight: Translated: 48605; Mature: 48605

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGRIRTVVLWILALLFIVITVNSNEPYLVRLRGGGHAALLIIALAAPLLLLLGGRWRHG
CCCHHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCC
LPGKMLVLAWCIPLIALTSTQFMFAWRKYETFRTAPDVAQLLGRHFMVGYTSLEDAAALA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEECCHHHHHHHH
RQGLIVGVYVTHHNVRGRTAAQLQADIARLQAERISAGLPPLLVSADQEGGSVAHLSPAV
HCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEECCCC
PNMPGLATLADLPSARRMQEAFEMGKSQGRSLAAAGITLNLAPVVDLRPRWTHNRFDFHT
CCCCCCHHHHCCCCHHHHHHHHHHHHHCCCEEEEECEEEEEEEEEECCCCCCCCCCHHHH
LINRRAISSDPAVVADIALGYVRGLEASGVRAAVKHFPGLGRVAADTHHFSAELDTSAEI
HHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHCCCCCCCCCCCCHHHH
LEQSDWLAFRGVLDKSDAAMMVGHVVVDAIDRERPASHSKAVLDGLIRGRWNYQGIIITD
HHCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEC
DLVMGAIYGRNLCEAVVESLSGGADILLVAYDGTQIHRVLACAKRALVDGRIDLEALRRS
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHCC
DERLGRWMPREDGTVAADASSPRAPAPSK
HHHHHCCCCCCCCEEEECCCCCCCCCCCC
>Mature Secondary Structure
MLGRIRTVVLWILALLFIVITVNSNEPYLVRLRGGGHAALLIIALAAPLLLLLGGRWRHG
CCCHHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCC
LPGKMLVLAWCIPLIALTSTQFMFAWRKYETFRTAPDVAQLLGRHFMVGYTSLEDAAALA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEECCHHHHHHHH
RQGLIVGVYVTHHNVRGRTAAQLQADIARLQAERISAGLPPLLVSADQEGGSVAHLSPAV
HCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEECCCC
PNMPGLATLADLPSARRMQEAFEMGKSQGRSLAAAGITLNLAPVVDLRPRWTHNRFDFHT
CCCCCCHHHHCCCCHHHHHHHHHHHHHCCCEEEEECEEEEEEEEEECCCCCCCCCCHHHH
LINRRAISSDPAVVADIALGYVRGLEASGVRAAVKHFPGLGRVAADTHHFSAELDTSAEI
HHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHCCCCCCCCCCCCHHHH
LEQSDWLAFRGVLDKSDAAMMVGHVVVDAIDRERPASHSKAVLDGLIRGRWNYQGIIITD
HHCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEC
DLVMGAIYGRNLCEAVVESLSGGADILLVAYDGTQIHRVLACAKRALVDGRIDLEALRRS
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHCC
DERLGRWMPREDGTVAADASSPRAPAPSK
HHHHHCCCCCCCCEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Cell Wall [C]

Specific reaction: Cell Wall = N-acetylglucosamin + anhydro-N-acetylmuramic acid [C]

General reaction: Hydrolyse [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]