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The map label for this gene is ydeP [H]

Identifier: 146340882

GI number: 146340882

Start: 4128996

End: 4131281

Strand: Reverse

Name: ydeP [H]

Synonym: BRADO3948

Alternate gene names: 146340882

Gene position: 4131281-4128996 (Counterclockwise)

Preceding gene: 146340883

Following gene: 146340879

Centisome position: 55.4

GC content: 63.17

Gene sequence:

>2286_bases
GTGAGTGAAAAGGCGAAGATTCAGGACTACAACGCACCTGCCGGCGGCTGGGGATCGGTGCGCGCCGTCGCGAGTATCCT
CACTCAGGAGGAAGTCACGCTGCTTGGCAGCGAAATCCTCTTGAAGCAGAACAAGCCTGGCGGCTTCATGTGCGTGAGCT
GCTCATGGGCGAAGCCGGCACAACCGCATCCGTTCGAATTCTGTGAGAACGGCGCGAAAGCCACCGCCTGGGAAATCACC
GGCAAGACCGTCGGGCCCGAGTTTTTCGCCCGGCATACCCTGACCGAGCTGCGAACGTGGTCGGACCATCAGCTCGAGGA
GCAGGGCCGGCTGACCCATCCGATGCGCTACGATGCCGCGAGCGATCGCTACCTTCCGGTGGGCTGGGACGAGGCGTTCG
GCGCGATCGGAGCTGAGTTGAAGGCGCTCGATCCTCGCAAGGTGGTGATGTACACGTCGGGTCGCGCCTCGCTCGAGACG
AGCTACATGTACCAGCTGTTCGGCCGAATGTATGGCACCAACAATTTCCCCGACAGCTCCAACATGTGCCATGAATCGAC
CTCGGTCGCCCTTCCGGAGGTGATCGGCGTCCCTGTGGGCACCGTGCTGCTGGACGATTACGACAAGGCCGACTGCATCC
TCTTCTTTGGTCAGAACACCACGACCAACTCGCCTCGCATGCTGCATCCGCTGCAGCGGGCGGCGCAACGTGGTGTCCCC
ATCATCACGTTCAATCCGCTGCGTGAGCGTGGCTTGGAGCGGTTCACAAATCCGCAAAATCCGATCCAGATGGTGCTGAC
CGGCGGCACGCGCATCAGCACGCAATACCATCAGCTCAGGGTCGGCGGCGACGGCGCGGCGCTGCTCGGGCTGTGCAAGG
CGGTCATCGAGGCCGATGACGCTGCGATCGCTACGAAGGGGCCGCGGGTTCTCGACGTTGCCTTCATCGAACAGCACACG
TCCGGCTTCGATGACTTCGCGAGCTACTGCCGGCAGGCGGCTTGGCACGACATCGAACACGCCTCCGGGCTTGGCCGGAC
TGATATTCTCGAAGCTGCCAAGGTCTACGCGTCCGCGCATGCGGTGATCGCCAATTACGGCATGGGGATCACGCAGCATC
GCCACGGCGTCGAGACTGCGAAGATGATCGTGAATCTCCTGCTGCTGCGCGGTAATATCGGCAGGCCTGGGGCCGGCATC
TCGCCGGTCCGCGGGCATTCCAACGTGCAGGGGCAGCGCACGGTCGGGATTTCCGAGAAGACCAAGCTGGTGCCGCTCGA
CCGGCTGGCCGAGCTCTACAATTTCGAGCCGCCGCGCTGGGATGGTCTCAGCACGGTCGACGCCTGCGAGGCGATCATCA
AAGGCGACGTGAAGGGCTTCGTCGGTCTTGGAGGAAATTTCCTGCGCGCGGTGCCGGAGACCTCGCTGATGGAGCCTGCC
TGGTCGAGGCTCCGCTTGTCGGTCCAGATCGCAACCAAACTCAACCGCACGCATCTCGTCCCCGGCGAGCACACCTATCT
GCTGCCGTGCCTCGGCCGGATCGAGATCGATCGGCAGGCGAGCGGGCCGCAGGCCGTGGCGATGGAAGATTCCACGACCT
GCATTCACGGCTCGCGCGGCCAGCGCCAGCCGGTCGCCGAAGGATTGTTGTCCGAGCCTGCCATCGTCGCAGGACTGGCC
AAGGCAACCCTGGCCCCCAATCCGAACGTGGACTGGGACAGATGGGTTGGCGACTACGCGCTGATCAGGGATGCAATCGA
GCAGACCTATCCGGATCAATTCAAGGACTTCAATGTACGGCTCTTCGAGCCTGGCGGCTTTCCACGTCCACTCGGCGCAC
GTGAGCGCAAGTGGAAGACAAAGACCGGCAAGGCGAACTTCACGGTGCCAAAGGCTGCCTTGAATCCGCCTGAGCAGGGC
AACGGCGTGTTCCAGTTGATGACCTTGCGTGCCGACGGGCAGTTCAACACCACGATCTACAATGAGGACGACCGCTTTCG
CGGTGTCAGCGGCGGCCGTATGGTTGTGTTCATGAACGTGCAAGACATCGGCGAGCTCGGCTTGGCGCAAGGCGACATGA
TCCGCCTTTCGACCGTGGCCGACGACGGTGTGGAGCGGTCGCTCGGCGGCCTCCAGGTGGTCGCGTTCGACATTCCGCGC
TACAGCGTTGCCGCCTACTATCCGGAGTGCAACGGACTGATTCCGCTATGGCACTACGCCGAGGGCAGCAAGGTGCCAGC
GGCCAAATCAGTTCCGGTCAGGATCAGGCGGGACGCGGCGGGCTAG

Upstream 100 bases:

>100_bases
CTCTGCCGCTTCCTTGCGGCCACTGCGCAATCTCCCGTGAGGGTCGGAACTTGCATCTCGGTCACGGGTTGGCCGGGCTT
TCAGGCCGCGGAGATGGATC

Downstream 100 bases:

>100_bases
GCGGCGGCGGGGTCAACTCGCAGCGCGCCGACGGTTCTGGTCAGGCGTGGCCTTCACGAAAGCGCTGGTCATCTCCGGCG
GAGATGCGCCGGGGCGAAGC

Product: formate dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 761; Mature: 760

Protein sequence:

>761_residues
MSEKAKIQDYNAPAGGWGSVRAVASILTQEEVTLLGSEILLKQNKPGGFMCVSCSWAKPAQPHPFEFCENGAKATAWEIT
GKTVGPEFFARHTLTELRTWSDHQLEEQGRLTHPMRYDAASDRYLPVGWDEAFGAIGAELKALDPRKVVMYTSGRASLET
SYMYQLFGRMYGTNNFPDSSNMCHESTSVALPEVIGVPVGTVLLDDYDKADCILFFGQNTTTNSPRMLHPLQRAAQRGVP
IITFNPLRERGLERFTNPQNPIQMVLTGGTRISTQYHQLRVGGDGAALLGLCKAVIEADDAAIATKGPRVLDVAFIEQHT
SGFDDFASYCRQAAWHDIEHASGLGRTDILEAAKVYASAHAVIANYGMGITQHRHGVETAKMIVNLLLLRGNIGRPGAGI
SPVRGHSNVQGQRTVGISEKTKLVPLDRLAELYNFEPPRWDGLSTVDACEAIIKGDVKGFVGLGGNFLRAVPETSLMEPA
WSRLRLSVQIATKLNRTHLVPGEHTYLLPCLGRIEIDRQASGPQAVAMEDSTTCIHGSRGQRQPVAEGLLSEPAIVAGLA
KATLAPNPNVDWDRWVGDYALIRDAIEQTYPDQFKDFNVRLFEPGGFPRPLGARERKWKTKTGKANFTVPKAALNPPEQG
NGVFQLMTLRADGQFNTTIYNEDDRFRGVSGGRMVVFMNVQDIGELGLAQGDMIRLSTVADDGVERSLGGLQVVAFDIPR
YSVAAYYPECNGLIPLWHYAEGSKVPAAKSVPVRIRRDAAG

Sequences:

>Translated_761_residues
MSEKAKIQDYNAPAGGWGSVRAVASILTQEEVTLLGSEILLKQNKPGGFMCVSCSWAKPAQPHPFEFCENGAKATAWEIT
GKTVGPEFFARHTLTELRTWSDHQLEEQGRLTHPMRYDAASDRYLPVGWDEAFGAIGAELKALDPRKVVMYTSGRASLET
SYMYQLFGRMYGTNNFPDSSNMCHESTSVALPEVIGVPVGTVLLDDYDKADCILFFGQNTTTNSPRMLHPLQRAAQRGVP
IITFNPLRERGLERFTNPQNPIQMVLTGGTRISTQYHQLRVGGDGAALLGLCKAVIEADDAAIATKGPRVLDVAFIEQHT
SGFDDFASYCRQAAWHDIEHASGLGRTDILEAAKVYASAHAVIANYGMGITQHRHGVETAKMIVNLLLLRGNIGRPGAGI
SPVRGHSNVQGQRTVGISEKTKLVPLDRLAELYNFEPPRWDGLSTVDACEAIIKGDVKGFVGLGGNFLRAVPETSLMEPA
WSRLRLSVQIATKLNRTHLVPGEHTYLLPCLGRIEIDRQASGPQAVAMEDSTTCIHGSRGQRQPVAEGLLSEPAIVAGLA
KATLAPNPNVDWDRWVGDYALIRDAIEQTYPDQFKDFNVRLFEPGGFPRPLGARERKWKTKTGKANFTVPKAALNPPEQG
NGVFQLMTLRADGQFNTTIYNEDDRFRGVSGGRMVVFMNVQDIGELGLAQGDMIRLSTVADDGVERSLGGLQVVAFDIPR
YSVAAYYPECNGLIPLWHYAEGSKVPAAKSVPVRIRRDAAG
>Mature_760_residues
SEKAKIQDYNAPAGGWGSVRAVASILTQEEVTLLGSEILLKQNKPGGFMCVSCSWAKPAQPHPFEFCENGAKATAWEITG
KTVGPEFFARHTLTELRTWSDHQLEEQGRLTHPMRYDAASDRYLPVGWDEAFGAIGAELKALDPRKVVMYTSGRASLETS
YMYQLFGRMYGTNNFPDSSNMCHESTSVALPEVIGVPVGTVLLDDYDKADCILFFGQNTTTNSPRMLHPLQRAAQRGVPI
ITFNPLRERGLERFTNPQNPIQMVLTGGTRISTQYHQLRVGGDGAALLGLCKAVIEADDAAIATKGPRVLDVAFIEQHTS
GFDDFASYCRQAAWHDIEHASGLGRTDILEAAKVYASAHAVIANYGMGITQHRHGVETAKMIVNLLLLRGNIGRPGAGIS
PVRGHSNVQGQRTVGISEKTKLVPLDRLAELYNFEPPRWDGLSTVDACEAIIKGDVKGFVGLGGNFLRAVPETSLMEPAW
SRLRLSVQIATKLNRTHLVPGEHTYLLPCLGRIEIDRQASGPQAVAMEDSTTCIHGSRGQRQPVAEGLLSEPAIVAGLAK
ATLAPNPNVDWDRWVGDYALIRDAIEQTYPDQFKDFNVRLFEPGGFPRPLGARERKWKTKTGKANFTVPKAALNPPEQGN
GVFQLMTLRADGQFNTTIYNEDDRFRGVSGGRMVVFMNVQDIGELGLAQGDMIRLSTVADDGVERSLGGLQVVAFDIPRY
SVAAYYPECNGLIPLWHYAEGSKVPAAKSVPVRIRRDAAG

Specific function: Probably involved in acid resistance [H]

COG id: COG0243

COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787778, Length=756, Percent_Identity=46.6931216931217, Blast_Score=683, Evalue=0.0,
Organism=Escherichia coli, GI3868721, Length=313, Percent_Identity=28.4345047923323, Blast_Score=129, Evalue=5e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR006657
- InterPro:   IPR006656
- InterPro:   IPR010046 [H]

Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]

EC number: NA

Molecular weight: Translated: 83260; Mature: 83128

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKAKIQDYNAPAGGWGSVRAVASILTQEEVTLLGSEILLKQNKPGGFMCVSCSWAKPA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEECCCCCC
QPHPFEFCENGAKATAWEITGKTVGPEFFARHTLTELRTWSDHQLEEQGRLTHPMRYDAA
CCCCHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEECCCC
SDRYLPVGWDEAFGAIGAELKALDPRKVVMYTSGRASLETSYMYQLFGRMYGTNNFPDSS
CCCEECCCHHHHHHHHCCHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC
NMCHESTSVALPEVIGVPVGTVLLDDYDKADCILFFGQNTTTNSPRMLHPLQRAAQRGVP
CCCCCCCCCCCCHHHCCCCCEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCC
IITFNPLRERGLERFTNPQNPIQMVLTGGTRISTQYHQLRVGGDGAALLGLCKAVIEADD
EEEECHHHHHHHHHHCCCCCCEEEEEECCEEEECEEEEEEECCCCHHHHHHHHHHHHCCC
AAIATKGPRVLDVAFIEQHTSGFDDFASYCRQAAWHDIEHASGLGRTDILEAAKVYASAH
CEEECCCCCEEEEEEHHHHCCCHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHH
AVIANYGMGITQHRHGVETAKMIVNLLLLRGNIGRPGAGISPVRGHSNVQGQRTVGISEK
HHHHHCCCCCHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
TKLVPLDRLAELYNFEPPRWDGLSTVDACEAIIKGDVKGFVGLGGNFLRAVPETSLMEPA
CEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCHHHHHCCCCHHHHHC
WSRLRLSVQIATKLNRTHLVPGEHTYLLPCLGRIEIDRQASGPQAVAMEDSTTCIHGSRG
HHHEEEEEEEEECCCCEEECCCCCEEEEECCCEEEECCCCCCCCEEEECCCCEEEECCCC
QRQPVAEGLLSEPAIVAGLAKATLAPNPNVDWDRWVGDYALIRDAIEQTYPDQFKDFNVR
CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
LFEPGGFPRPLGARERKWKTKTGKANFTVPKAALNPPEQGNGVFQLMTLRADGQFNTTIY
EECCCCCCCCCCCCCCCCCCCCCCCCEECCHHHCCCCCCCCCEEEEEEEEECCCCCCEEE
NEDDRFRGVSGGRMVVFMNVQDIGELGLAQGDMIRLSTVADDGVERSLGGLQVVAFDIPR
CCCCCEECCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCHHHCCCCEEEEEEECCC
YSVAAYYPECNGLIPLWHYAEGSKVPAAKSVPVRIRRDAAG
CEEEEECCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCC
>Mature Secondary Structure 
SEKAKIQDYNAPAGGWGSVRAVASILTQEEVTLLGSEILLKQNKPGGFMCVSCSWAKPA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEECCCCCC
QPHPFEFCENGAKATAWEITGKTVGPEFFARHTLTELRTWSDHQLEEQGRLTHPMRYDAA
CCCCHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEECCCC
SDRYLPVGWDEAFGAIGAELKALDPRKVVMYTSGRASLETSYMYQLFGRMYGTNNFPDSS
CCCEECCCHHHHHHHHCCHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC
NMCHESTSVALPEVIGVPVGTVLLDDYDKADCILFFGQNTTTNSPRMLHPLQRAAQRGVP
CCCCCCCCCCCCHHHCCCCCEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCC
IITFNPLRERGLERFTNPQNPIQMVLTGGTRISTQYHQLRVGGDGAALLGLCKAVIEADD
EEEECHHHHHHHHHHCCCCCCEEEEEECCEEEECEEEEEEECCCCHHHHHHHHHHHHCCC
AAIATKGPRVLDVAFIEQHTSGFDDFASYCRQAAWHDIEHASGLGRTDILEAAKVYASAH
CEEECCCCCEEEEEEHHHHCCCHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHH
AVIANYGMGITQHRHGVETAKMIVNLLLLRGNIGRPGAGISPVRGHSNVQGQRTVGISEK
HHHHHCCCCCHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
TKLVPLDRLAELYNFEPPRWDGLSTVDACEAIIKGDVKGFVGLGGNFLRAVPETSLMEPA
CEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCHHHHHCCCCHHHHHC
WSRLRLSVQIATKLNRTHLVPGEHTYLLPCLGRIEIDRQASGPQAVAMEDSTTCIHGSRG
HHHEEEEEEEEECCCCEEECCCCCEEEEECCCEEEECCCCCCCCEEEECCCCEEEECCCC
QRQPVAEGLLSEPAIVAGLAKATLAPNPNVDWDRWVGDYALIRDAIEQTYPDQFKDFNVR
CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
LFEPGGFPRPLGARERKWKTKTGKANFTVPKAALNPPEQGNGVFQLMTLRADGQFNTTIY
EECCCCCCCCCCCCCCCCCCCCCCCCEECCHHHCCCCCCCCCEEEEEEEEECCCCCCEEE
NEDDRFRGVSGGRMVVFMNVQDIGELGLAQGDMIRLSTVADDGVERSLGGLQVVAFDIPR
CCCCCEECCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCHHHCCCCEEEEEEECCC
YSVAAYYPECNGLIPLWHYAEGSKVPAAKSVPVRIRRDAAG
CEEEEECCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]