Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
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Accession | NC_009445 |
Length | 7,456,587 |
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The map label for this gene is 146340724
Identifier: 146340724
GI number: 146340724
Start: 3949261
End: 3950028
Strand: Direct
Name: 146340724
Synonym: BRADO3777
Alternate gene names: NA
Gene position: 3949261-3950028 (Clockwise)
Preceding gene: 146340719
Following gene: 146340726
Centisome position: 52.96
GC content: 67.58
Gene sequence:
>768_bases TTGGCCTCGTCGGTTGGGCCGCGTGGGCGGCTCGTCGCCCTGCTGGCAGTCACCGCGCTGGCCGTTTCGTTCGCCTCGGA GGTGCAGGCGCAGGCCCAGCCGCCCGCGGCACCCAAGGCGAAGGCTCCGGCTCCGGCCGCTCCCAAGGCTCCCGCTCCGG CCGCGCAGGCGCCGGCCGCTCCTCCCGCCGCCGGCCAGCCTCAGCAGCAGGCGCAGCAGCAGGAAATGCCGCAGCTGATC TATGCGCCCTGGACCAAGTTCTGCCTCAAGGGCCAGGACGCCAATGCCAAGCAGGTCTGCTTCATCGGCAAGGACGGGCG TATCGAATCCGGTCAGCCTGTGGTTGCAGCCGTCATCATCGAGCCGGAAGGCGAGCCGAAGAAGATCCTGCGCGTGACCC TGCCGCTCGGCATGCAGCTGCAGCCCGGCACCCGTATCGTGGTCGACAGCAACCAGGCGCTGCAGAGCCCCTATGTGATC TGCTTCCAGAACGGTTGCATGTCCGACTACGAAGCGACCGCGGACTTCCTCGGCAGCCTCAAGAAGGGCCAGACCCTCTA CGTGCAGGCGATCAACTCCAACGGCACCGCGCTGACCCTGCCGCTGCCGCTGCAGGAAGGCAACAGCAGCTTCGCCAAGG CCTATGACGGCCCGCCGACCGATCCGAAGGAGTTCGAGAAGACCCAGCAGAAGCTGCAGGAAGAGCTGCAGAAGCGCGCC GAGGAGCAGCGCAAGAAGCTGGAGCAGACGCAGCCTCCGGCGAAGTAG
Upstream 100 bases:
>100_bases TTTCCTGAGGAGACAGCCGCTTCAACGGCTTGGTGTGGCGCCTTTGGCGGTCTCGGGCGCTGCCGTTCAGAAAGGGTTTT CCGCAATGAATTTCCGTGAC
Downstream 100 bases:
>100_bases TAACGCCGCCAGGGTTCGATGCATCGACACGCAAAAGGCGCTCCGGTCGGAGCGCCTTTTTTATTCAGGTCAGGATTTGT TGGTGAACACCGCGCGCGAG
Product: putative signal peptide
Products: NA
Alternate protein names: Invasion Associated Locus B; Signal Peptide; Invasion Associated Locus B Protein
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MASSVGPRGRLVALLAVTALAVSFASEVQAQAQPPAAPKAKAPAPAAPKAPAPAAQAPAAPPAAGQPQQQAQQQEMPQLI YAPWTKFCLKGQDANAKQVCFIGKDGRIESGQPVVAAVIIEPEGEPKKILRVTLPLGMQLQPGTRIVVDSNQALQSPYVI CFQNGCMSDYEATADFLGSLKKGQTLYVQAINSNGTALTLPLPLQEGNSSFAKAYDGPPTDPKEFEKTQQKLQEELQKRA EEQRKKLEQTQPPAK
Sequences:
>Translated_255_residues MASSVGPRGRLVALLAVTALAVSFASEVQAQAQPPAAPKAKAPAPAAPKAPAPAAQAPAAPPAAGQPQQQAQQQEMPQLI YAPWTKFCLKGQDANAKQVCFIGKDGRIESGQPVVAAVIIEPEGEPKKILRVTLPLGMQLQPGTRIVVDSNQALQSPYVI CFQNGCMSDYEATADFLGSLKKGQTLYVQAINSNGTALTLPLPLQEGNSSFAKAYDGPPTDPKEFEKTQQKLQEELQKRA EEQRKKLEQTQPPAK >Mature_254_residues ASSVGPRGRLVALLAVTALAVSFASEVQAQAQPPAAPKAKAPAPAAPKAPAPAAQAPAAPPAAGQPQQQAQQQEMPQLIY APWTKFCLKGQDANAKQVCFIGKDGRIESGQPVVAAVIIEPEGEPKKILRVTLPLGMQLQPGTRIVVDSNQALQSPYVIC FQNGCMSDYEATADFLGSLKKGQTLYVQAINSNGTALTLPLPLQEGNSSFAKAYDGPPTDPKEFEKTQQKLQEELQKRAE EQRKKLEQTQPPAK
Specific function: Unknown
COG id: COG5342
COG function: function code R; Invasion protein B, involved in pathogenesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27131; Mature: 27000
Theoretical pI: Translated: 8.88; Mature: 8.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASSVGPRGRLVALLAVTALAVSFASEVQAQAQPPAAPKAKAPAPAAPKAPAPAAQAPAA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PPAAGQPQQQAQQQEMPQLIYAPWTKFCLKGQDANAKQVCFIGKDGRIESGQPVVAAVII CCCCCCCHHHHHHHHCCCEECCCHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEEEE EPEGEPKKILRVTLPLGMQLQPGTRIVVDSNQALQSPYVICFQNGCMSDYEATADFLGSL CCCCCCCEEEEEECCCCCEECCCCEEEEECCHHHCCCEEEEECCCCCCCHHHHHHHHHHH KKGQTLYVQAINSNGTALTLPLPLQEGNSSFAKAYDGPPTDPKEFEKTQQKLQEELQKRA CCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH EEQRKKLEQTQPPAK HHHHHHHHHCCCCCC >Mature Secondary Structure ASSVGPRGRLVALLAVTALAVSFASEVQAQAQPPAAPKAKAPAPAAPKAPAPAAQAPAA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PPAAGQPQQQAQQQEMPQLIYAPWTKFCLKGQDANAKQVCFIGKDGRIESGQPVVAAVII CCCCCCCHHHHHHHHCCCEECCCHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEEEE EPEGEPKKILRVTLPLGMQLQPGTRIVVDSNQALQSPYVICFQNGCMSDYEATADFLGSL CCCCCCCEEEEEECCCCCEECCCCEEEEECCHHHCCCEEEEECCCCCCCHHHHHHHHHHH KKGQTLYVQAINSNGTALTLPLPLQEGNSSFAKAYDGPPTDPKEFEKTQQKLQEELQKRA CCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH EEQRKKLEQTQPPAK HHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA