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The map label for this gene is ydiD [C]

Identifier: 146340722

GI number: 146340722

Start: 3945601

End: 3947145

Strand: Reverse

Name: ydiD [C]

Synonym: BRADO3775

Alternate gene names: 146340722

Gene position: 3947145-3945601 (Counterclockwise)

Preceding gene: 146340723

Following gene: 146340721

Centisome position: 52.94

GC content: 69.45

Gene sequence:

>1545_bases
TTGGTCGGCCGGATCCGTGAAAGTACGGGGCAGAAGGTGAATCAGGCCAATACGTCGCCGACGCTCGACGCGTTGTTTCA
ACGCATCCTGGCGCGCAAGCCGGATGCCGTCGCCCTCGTCGATCCGAGCAACAAGCAGCGCGTCACCGGGCGTCCCCCGA
TGCGGCTCACCTACTCCGAAGCCGATCGCGTGATCTCGGCGCTGGCAGCGCATTTCATTGACGCCGGACTGCCCGCGCAT
TCGGTGATCGCCGTGCAACTGCCCAACACGATCGAGTTTGTGCTGACGGTGCTCGCCGCGCACCGCGCCGGCCTCGTCGT
CGCTGTGTTCCCGTTGCTGTGGCGTCAGTCCGAGCTGGTCGCGGCGCTCAACCGCACCAGCGCGCGCGCGATCGTGACCA
TGTCCAAGATCGACGGCGTCATCCACGCGGATCTCGCGATGAACGCCGCCGCGGAGGCGTTCTCGATCCGGCACGTCTGC
GGTTTCGGCAGCGATCTGCCCGAGGGCATGTATTCGCTCGACCAGTCGATCGCAAAGCCCTCCCGCTCGACGCGCGGGAT
CATGCCGGACGGTCGCAAGGCAGCGATCGTGTCGTTCGACGTCACGGCCGATGGTTTTCGCGCGGTGCCACGGACGCATC
TCAGCCTGATCGCCGGCGGGCTCGCGGTCTCGCTCGAAAGCGATCTGCCGCAGGGCGTGAATATGATGTCGGCGTTCCTG
CCGTCGTCCTTCGCCGGGCTCGCCGCCTCCGTCGTCACCTGGCTGCTGTCGGGCGGCAGCCTCGCGCTGCATCATCCGTT
CGATGCCGACGCCCTGGAGCAGCAGCTCGCGCAGCTCGGCTGCGATACCCTGATCGTGCCGGCGCAGCTCGCGTTCCGTC
TCGACGAAGGCGAGCTCGCGGCCCGCCTGCCCAGCCTGCGCTATGTGCTCGGCATGTGGCGCGCGCCCGAGCAGGTCGCC
TCGAGCCCGGCCTGGAAGACCCACGCGATCGAGCTGACCGACGTCTATCTGTTCGGCGAGGCCGGACTGTTCGCCATCCG
CCGGACCTCGGCTGACGGCAGTCCCGGTCCGGTCAAGCCGGGTCGCCAGGGTGCCCCGCGCGAGCAGCCGGGATCGTCGA
TCGCCGGCGAGATCCTGGTGACGCCCAAGGGGACGCTCGGCCTGCGTGGACCGATGGTCGTGGTGGCCGCCTATGCGCCG
CCGCCGCCTCCGAGCGACTCGCTGATGCCGGCGCCGCCGCGTGATTTCGTCGACACCGAATACGCCGTGCGGCTCGACCG
CGTCCACGACACGATCTCGATCACCGCGCCGCCGGCCGGCGTGATGGCCGTGGGCGGCTACCGCTTCCTTGCACAAGACC
TGCACGAATGGTCGCGGCGCCTCGGCCAGGGCGCGCTGCTGACGGCCCTGCCCGACCGTCTGAGCGGCCATCGGCTTGCG
GGCCGCGCAATGGACAATGCCCGCGCGCGCGAGGCGTTGGCCGAGCTCGGACTCAATCCGCTGATGGTCGAGGCCTTCCG
CGACCGCGCCGGCTCAGGCGGCTGA

Upstream 100 bases:

>100_bases
AATCGTATAGAACGGCCCAAGAGAACAGCTTTGACGGGAGCGCTCCCGGAGAGCTGGTGGCAGCGGCCGGAGCCGGCATC
GAAATGACCAACCGGGGCAG

Downstream 100 bases:

>100_bases
AGCTGCCGTCCGGGCGAATGCGGTGCGTGCGTGTTCGGAACAGTGTTGACGGCGCGTTAACGGGAGCGACCTAGGATCGC
GACAGTATCGTCAGCGTATC

Product: putative acid-CoA ligase

Products: NA

Alternate protein names: Acid-CoA Ligase; Acyl-CoA Synthetase/AMP-Acid Ligase II-Like Protein; Acyl-CoA Ligase/Synthetase; 2 3-Dihydrosybenzoate-AMP Ligase; AMP-Dependent Acyl-CoA Synthetase/AMP-Acid Ligases II; Peroxisomal-Co A Synthetase; Fatty-Acid-CoA Ligase

Number of amino acids: Translated: 514; Mature: 514

Protein sequence:

>514_residues
MVGRIRESTGQKVNQANTSPTLDALFQRILARKPDAVALVDPSNKQRVTGRPPMRLTYSEADRVISALAAHFIDAGLPAH
SVIAVQLPNTIEFVLTVLAAHRAGLVVAVFPLLWRQSELVAALNRTSARAIVTMSKIDGVIHADLAMNAAAEAFSIRHVC
GFGSDLPEGMYSLDQSIAKPSRSTRGIMPDGRKAAIVSFDVTADGFRAVPRTHLSLIAGGLAVSLESDLPQGVNMMSAFL
PSSFAGLAASVVTWLLSGGSLALHHPFDADALEQQLAQLGCDTLIVPAQLAFRLDEGELAARLPSLRYVLGMWRAPEQVA
SSPAWKTHAIELTDVYLFGEAGLFAIRRTSADGSPGPVKPGRQGAPREQPGSSIAGEILVTPKGTLGLRGPMVVVAAYAP
PPPPSDSLMPAPPRDFVDTEYAVRLDRVHDTISITAPPAGVMAVGGYRFLAQDLHEWSRRLGQGALLTALPDRLSGHRLA
GRAMDNARAREALAELGLNPLMVEAFRDRAGSGG

Sequences:

>Translated_514_residues
MVGRIRESTGQKVNQANTSPTLDALFQRILARKPDAVALVDPSNKQRVTGRPPMRLTYSEADRVISALAAHFIDAGLPAH
SVIAVQLPNTIEFVLTVLAAHRAGLVVAVFPLLWRQSELVAALNRTSARAIVTMSKIDGVIHADLAMNAAAEAFSIRHVC
GFGSDLPEGMYSLDQSIAKPSRSTRGIMPDGRKAAIVSFDVTADGFRAVPRTHLSLIAGGLAVSLESDLPQGVNMMSAFL
PSSFAGLAASVVTWLLSGGSLALHHPFDADALEQQLAQLGCDTLIVPAQLAFRLDEGELAARLPSLRYVLGMWRAPEQVA
SSPAWKTHAIELTDVYLFGEAGLFAIRRTSADGSPGPVKPGRQGAPREQPGSSIAGEILVTPKGTLGLRGPMVVVAAYAP
PPPPSDSLMPAPPRDFVDTEYAVRLDRVHDTISITAPPAGVMAVGGYRFLAQDLHEWSRRLGQGALLTALPDRLSGHRLA
GRAMDNARAREALAELGLNPLMVEAFRDRAGSGG
>Mature_514_residues
MVGRIRESTGQKVNQANTSPTLDALFQRILARKPDAVALVDPSNKQRVTGRPPMRLTYSEADRVISALAAHFIDAGLPAH
SVIAVQLPNTIEFVLTVLAAHRAGLVVAVFPLLWRQSELVAALNRTSARAIVTMSKIDGVIHADLAMNAAAEAFSIRHVC
GFGSDLPEGMYSLDQSIAKPSRSTRGIMPDGRKAAIVSFDVTADGFRAVPRTHLSLIAGGLAVSLESDLPQGVNMMSAFL
PSSFAGLAASVVTWLLSGGSLALHHPFDADALEQQLAQLGCDTLIVPAQLAFRLDEGELAARLPSLRYVLGMWRAPEQVA
SSPAWKTHAIELTDVYLFGEAGLFAIRRTSADGSPGPVKPGRQGAPREQPGSSIAGEILVTPKGTLGLRGPMVVVAAYAP
PPPPSDSLMPAPPRDFVDTEYAVRLDRVHDTISITAPPAGVMAVGGYRFLAQDLHEWSRRLGQGALLTALPDRLSGHRLA
GRAMDNARAREALAELGLNPLMVEAFRDRAGSGG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693145, Length=324, Percent_Identity=27.7777777777778, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54579; Mature: 54579

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: PS00136 SUBTILASE_ASP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGRIRESTGQKVNQANTSPTLDALFQRILARKPDAVALVDPSNKQRVTGRPPMRLTYSE
CCCCCCHHHCCHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEHHH
ADRVISALAAHFIDAGLPAHSVIAVQLPNTIEFVLTVLAAHRAGLVVAVFPLLWRQSELV
HHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHH
AALNRTSARAIVTMSKIDGVIHADLAMNAAAEAFSIRHVCGFGSDLPEGMYSLDQSIAKP
HHHHCCCCCEEEEHHHHCCEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
SRSTRGIMPDGRKAAIVSFDVTADGFRAVPRTHLSLIAGGLAVSLESDLPQGVNMMSAFL
CCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHH
PSSFAGLAASVVTWLLSGGSLALHHPFDADALEQQLAQLGCDTLIVPAQLAFRLDEGELA
CHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCEEEECCHHEEEECCCHHH
ARLPSLRYVLGMWRAPEQVASSPAWKTHAIELTDVYLFGEAGLFAIRRTSADGSPGPVKP
HHCCHHHHHHHHCCCCHHHHCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCC
GRQGAPREQPGSSIAGEILVTPKGTLGLRGPMVVVAAYAPPPPPSDSLMPAPPRDFVDTE
CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCH
YAVRLDRVHDTISITAPPAGVMAVGGYRFLAQDLHEWSRRLGQGALLTALPDRLSGHRLA
HHHHHHHHCCEEEEECCCCCEEEECHHHHHHHHHHHHHHHHCCCEEEECCCHHCCCCHHH
GRAMDNARAREALAELGLNPLMVEAFRDRAGSGG
HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
>Mature Secondary Structure
MVGRIRESTGQKVNQANTSPTLDALFQRILARKPDAVALVDPSNKQRVTGRPPMRLTYSE
CCCCCCHHHCCHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEHHH
ADRVISALAAHFIDAGLPAHSVIAVQLPNTIEFVLTVLAAHRAGLVVAVFPLLWRQSELV
HHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHH
AALNRTSARAIVTMSKIDGVIHADLAMNAAAEAFSIRHVCGFGSDLPEGMYSLDQSIAKP
HHHHCCCCCEEEEHHHHCCEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
SRSTRGIMPDGRKAAIVSFDVTADGFRAVPRTHLSLIAGGLAVSLESDLPQGVNMMSAFL
CCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHH
PSSFAGLAASVVTWLLSGGSLALHHPFDADALEQQLAQLGCDTLIVPAQLAFRLDEGELA
CHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCEEEECCHHEEEECCCHHH
ARLPSLRYVLGMWRAPEQVASSPAWKTHAIELTDVYLFGEAGLFAIRRTSADGSPGPVKP
HHCCHHHHHHHHCCCCHHHHCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCC
GRQGAPREQPGSSIAGEILVTPKGTLGLRGPMVVVAAYAPPPPPSDSLMPAPPRDFVDTE
CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCH
YAVRLDRVHDTISITAPPAGVMAVGGYRFLAQDLHEWSRRLGQGALLTALPDRLSGHRLA
HHHHHHHHCCEEEEECCCCCEEEECHHHHHHHHHHHHHHHHCCCEEEECCCHHCCCCHHH
GRAMDNARAREALAELGLNPLMVEAFRDRAGSGG
HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA