Click here to switch to the map view.

The map label for this gene is degP [H]

Identifier: 146340688

GI number: 146340688

Start: 3902239

End: 3903105

Strand: Reverse

Name: degP [H]

Synonym: BRADO3739

Alternate gene names: 146340688

Gene position: 3903105-3902239 (Counterclockwise)

Preceding gene: 146340689

Following gene: 146340687

Centisome position: 52.34

GC content: 70.24

Gene sequence:

>867_bases
ATGTCCGATCTCTCTGCTCTCTCCGCGCTGTCCTCAGCGCTCGCCGCGAGCGTCGCCGCGGCCGCGCCCTCGCTCGTCTC
CGTCCACTCGCACCGCTCGCGCGCCTCCGGCTTCGTCTGGAAGCCCGGCTTGGTCATCACCGCCGATGAGGCGCTCGCCG
ACGAGGGAGAGGTGTCGCTCGTGTTCGCTGATGGCACGACGCGGCCTGCCGCCATCGCGGGGCGCGATCACACGACGGAC
ATCGCCCTGCTCCGCTTCGATGGCAAAGACGGAAAGGCTGCTCCGATTGCCGCCAAGGTACCGCTGATCGGTGCACTGGC
GGTGACCGTTGCCGCCGATCATGGCACGCCGGTCGCATCGCTGACGATGGTGTCGAAATCCGCCGGCGCCTGGCGCAGCC
TGCGCGGTGGCGAGATCAACGCGCGGATCGAGCTCGACATCAGGCTGCGTCACAGCTCGGAGGGCGGCCTCGTGCTCGAT
GCCGAGGGACACGCGATCGGCATGGCCGTGCGTGGCCCGCGCCGGACACTCGTGATCCCCTCCGCGACCGTGGCGCGCGT
CGCCGGCAAGCTCGAAACTCATGGACGCATCGCGCGCGGCTATCTCGGCGCCGGCCTGCAGCCGGTACGGCTCGATGACG
GGATGGGCGCGATGGTGATGAGCATCGACAAGGCTGGTCCCGCCGCCGCGGCGGGTTTGCGCCAGGGTGACGTCATCACC
GCGCTCAACAACGAGCCGTTCAGGGGCATGCGCGCCCTGATGCGCGAGCTCGGGCCGGACAGCGTCGGCGCGATCGTCGA
CATCGCCGCATTGCGCGCAGGCGAGCCGCTGCGGCTCGCGTTGACCATTGGCGAGAGGCCCGCGTGA

Upstream 100 bases:

>100_bases
CGCTGCGCTCATCCGGGCTACAGAGATGGAGCCTGCCCACCCGGGGAGTTCCGAAACGATCATCGACGCTCCACATTGGG
CTCAACCCATGGAGCCTTCG

Downstream 100 bases:

>100_bases
GCGCGGACGACAGCGCAGCGATCACGCTCGCCATCGCGGTCGACGATGCCGAGCTGGCGGATCGGCTGGCGGCGCTGCTC
GGCGGCGTCGCCGGTCTGCG

Product: Serine protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MSDLSALSALSSALAASVAAAAPSLVSVHSHRSRASGFVWKPGLVITADEALADEGEVSLVFADGTTRPAAIAGRDHTTD
IALLRFDGKDGKAAPIAAKVPLIGALAVTVAADHGTPVASLTMVSKSAGAWRSLRGGEINARIELDIRLRHSSEGGLVLD
AEGHAIGMAVRGPRRTLVIPSATVARVAGKLETHGRIARGYLGAGLQPVRLDDGMGAMVMSIDKAGPAAAAGLRQGDVIT
ALNNEPFRGMRALMRELGPDSVGAIVDIAALRAGEPLRLALTIGERPA

Sequences:

>Translated_288_residues
MSDLSALSALSSALAASVAAAAPSLVSVHSHRSRASGFVWKPGLVITADEALADEGEVSLVFADGTTRPAAIAGRDHTTD
IALLRFDGKDGKAAPIAAKVPLIGALAVTVAADHGTPVASLTMVSKSAGAWRSLRGGEINARIELDIRLRHSSEGGLVLD
AEGHAIGMAVRGPRRTLVIPSATVARVAGKLETHGRIARGYLGAGLQPVRLDDGMGAMVMSIDKAGPAAAAGLRQGDVIT
ALNNEPFRGMRALMRELGPDSVGAIVDIAALRAGEPLRLALTIGERPA
>Mature_287_residues
SDLSALSALSSALAASVAAAAPSLVSVHSHRSRASGFVWKPGLVITADEALADEGEVSLVFADGTTRPAAIAGRDHTTDI
ALLRFDGKDGKAAPIAAKVPLIGALAVTVAADHGTPVASLTMVSKSAGAWRSLRGGEINARIELDIRLRHSSEGGLVLDA
EGHAIGMAVRGPRRTLVIPSATVARVAGKLETHGRIARGYLGAGLQPVRLDDGMGAMVMSIDKAGPAAAAGLRQGDVITA
LNNEPFRGMRALMRELGPDSVGAIVDIAALRAGEPLRLALTIGERPA

Specific function: Unknown

COG id: COG0265

COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PDZ (DHR) domains [H]

Homologues:

Organism=Escherichia coli, GI1789630, Length=308, Percent_Identity=25.6493506493506, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789629, Length=259, Percent_Identity=28.1853281853282, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786356, Length=263, Percent_Identity=25.8555133079848, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR009003
- InterPro:   IPR011782
- InterPro:   IPR001254
- InterPro:   IPR001940 [H]

Pfam domain/function: PF00595 PDZ; PF00089 Trypsin [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 29426; Mature: 29295

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLSALSALSSALAASVAAAAPSLVSVHSHRSRASGFVWKPGLVITADEALADEGEVSL
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCEECCCEEEEECHHHCCCCCEEE
VFADGTTRPAAIAGRDHTTDIALLRFDGKDGKAAPIAAKVPLIGALAVTVAADHGTPVAS
EEECCCCCCEEEECCCCCCEEEEEEEECCCCCCCCEEECCCCEEEEEEEEEECCCCCEEE
LTMVSKSAGAWRSLRGGEINARIELDIRLRHSSEGGLVLDAEGHAIGMAVRGPRRTLVIP
EEEEECCCCCHHCCCCCEEEEEEEEEEEEEECCCCCEEEECCCCEEEEEEECCCEEEEEC
SATVARVAGKLETHGRIARGYLGAGLQPVRLDDGMGAMVMSIDKAGPAAAAGLRQGDVIT
CHHHHHHHHHHHCCCCEEEHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHCCCCCCEEE
ALNNEPFRGMRALMRELGPDSVGAIVDIAALRAGEPLRLALTIGERPA
EECCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCC
>Mature Secondary Structure 
SDLSALSALSSALAASVAAAAPSLVSVHSHRSRASGFVWKPGLVITADEALADEGEVSL
CHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCEECCCEEEEECHHHCCCCCEEE
VFADGTTRPAAIAGRDHTTDIALLRFDGKDGKAAPIAAKVPLIGALAVTVAADHGTPVAS
EEECCCCCCEEEECCCCCCEEEEEEEECCCCCCCCEEECCCCEEEEEEEEEECCCCCEEE
LTMVSKSAGAWRSLRGGEINARIELDIRLRHSSEGGLVLDAEGHAIGMAVRGPRRTLVIP
EEEEECCCCCHHCCCCCEEEEEEEEEEEEEECCCCCEEEECCCCEEEEEEECCCEEEEEC
SATVARVAGKLETHGRIARGYLGAGLQPVRLDDGMGAMVMSIDKAGPAAAAGLRQGDVIT
CHHHHHHHHHHHCCCCEEEHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHCCCCCCEEE
ALNNEPFRGMRALMRELGPDSVGAIVDIAALRAGEPLRLALTIGERPA
EECCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10684935 [H]