| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
Click here to switch to the map view.
The map label for this gene is yurO [H]
Identifier: 146340519
GI number: 146340519
Start: 3754639
End: 3755898
Strand: Direct
Name: yurO [H]
Synonym: BRADO3561
Alternate gene names: 146340519
Gene position: 3754639-3755898 (Clockwise)
Preceding gene: 146340518
Following gene: 146340520
Centisome position: 50.35
GC content: 63.97
Gene sequence:
>1260_bases ATGAGACTGCTTGCGAAGCTTGGCCTCGCCGCGGCTGCATGCCTTGTTGGGGCGAGCGCCGTTCTAGCCGACACCACCGT CAAATGGCTGCACATCGAGGTCAACCCGGCCCAGGTGAAGATCTGGGAGGAGGTGGCGCGCGCTTATGAGGCGTCGCATC CGGGCACGAAGATCGAGATGCAGTTCCTGGAGAACGAGGCCTACAAGGCCAAGCTGCCGACCATCCTGCAATCGAAGGAT CGCCCGAACATCATCTACAGCTGGGCCGGCGGCGTGCTGAAGGCGCAGATCGAGGCCGGCGTTCTCGAGGACATCACCGA CCAGGTGAAGGGCTACAGCGACAGCATCACGCCGGCGGCGCTCGCCGCTTTCACCGACAAAGGCCGCGTCTACGGCCTGC CGATCGCACTCTCGCAGGTCGGCTTCGTCTGCAACAGGGAGCTGATGGCCAAGGCCAAGGTCGATCCTGCAGTCATCAAA ACCTGGGATGATCTGCTGACCGCCGTCAAGACCTTGAAGGCTGCCGGCGTCACGCCGATCGTGGTGGGCGGCGCCGACAA ATGGCCGCTGCACTTCTACTGGACGCACCTCGCGGTGCGCCTCGGCGGCAAGCCGGCGTTCGAGGCGGCGCTCCGCGGCG AGAATGGCGGCTTCGCGGCCGACACCTTCGTCAAATCCGGTGAGCTGTTCAAGCAATTGGTCGACCTCCAGCCGTTCCAG AACGGCTTCCTCGGCTTCAAGAACCCGCAGGCCGTCGGCTATTTCGGTGACGGCAAGGCGGCCATGACGCTGGCGATCAG CTCGGTCTACAATCTGCAGCGGGCGCTCGCGGCCGACAAGGTGGGCTTGGGCGAGGACAAGATCTGCTGGTTCGATTTCC CGACCGTCGCGGACGGCAAGGGCGCGCCGACGGACACGCTCGGCGGTATCACCGGCTGGCTCGTCACCAAGGGTTCGCCG AAGGAGGCGGTCGACTTCCTGAAATACTTCATCTCGAAGGATGTGCAGACGCGGCTTGCGGCGGGCAACTTCATTGTCCC GGTGGTGCAGGGCGCCGAAGCCGGCCTCACCAACTCCTTCATGAAGCAGATCGCGGCCAATCTGGCGAAGTCGAACTATC ACCAGAACTTCTATGACCAGAGTCTGGGTCCGTCGGTCGGCCGCGTCGTCAATGACGTCAGCGCCGAGATTGCTGGCGGC AGCATGAGTCCGCAGGACGCCGCCAAGGCCATCGAAGCGGCGCGGAAACAGGGCAACTGA
Upstream 100 bases:
>100_bases GAAGCTCTCTTGTGAGGTTTTCAGGTCAGATTTTTAGTTGCGCACCTCAATTTTTGAGGACAGGATTGCTTCAACAAAAA AGACGGTTGGGAGGATTCTG
Downstream 100 bases:
>100_bases CGTGGCGCGTCCGATCGCGAGTACCCCGGCCATGCAAGTTGCGCGGCCGAAGCTCGCCGCGCATGCCAGCCGCGGCCCGA GCTGGGATGGCCGATTTACG
Product: putative ABC sugar transporter substrate binding protein
Products: ADP; phosphate; maltose [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 419; Mature: 419
Protein sequence:
>419_residues MRLLAKLGLAAAACLVGASAVLADTTVKWLHIEVNPAQVKIWEEVARAYEASHPGTKIEMQFLENEAYKAKLPTILQSKD RPNIIYSWAGGVLKAQIEAGVLEDITDQVKGYSDSITPAALAAFTDKGRVYGLPIALSQVGFVCNRELMAKAKVDPAVIK TWDDLLTAVKTLKAAGVTPIVVGGADKWPLHFYWTHLAVRLGGKPAFEAALRGENGGFAADTFVKSGELFKQLVDLQPFQ NGFLGFKNPQAVGYFGDGKAAMTLAISSVYNLQRALAADKVGLGEDKICWFDFPTVADGKGAPTDTLGGITGWLVTKGSP KEAVDFLKYFISKDVQTRLAAGNFIVPVVQGAEAGLTNSFMKQIAANLAKSNYHQNFYDQSLGPSVGRVVNDVSAEIAGG SMSPQDAAKAIEAARKQGN
Sequences:
>Translated_419_residues MRLLAKLGLAAAACLVGASAVLADTTVKWLHIEVNPAQVKIWEEVARAYEASHPGTKIEMQFLENEAYKAKLPTILQSKD RPNIIYSWAGGVLKAQIEAGVLEDITDQVKGYSDSITPAALAAFTDKGRVYGLPIALSQVGFVCNRELMAKAKVDPAVIK TWDDLLTAVKTLKAAGVTPIVVGGADKWPLHFYWTHLAVRLGGKPAFEAALRGENGGFAADTFVKSGELFKQLVDLQPFQ NGFLGFKNPQAVGYFGDGKAAMTLAISSVYNLQRALAADKVGLGEDKICWFDFPTVADGKGAPTDTLGGITGWLVTKGSP KEAVDFLKYFISKDVQTRLAAGNFIVPVVQGAEAGLTNSFMKQIAANLAKSNYHQNFYDQSLGPSVGRVVNDVSAEIAGG SMSPQDAAKAIEAARKQGN >Mature_419_residues MRLLAKLGLAAAACLVGASAVLADTTVKWLHIEVNPAQVKIWEEVARAYEASHPGTKIEMQFLENEAYKAKLPTILQSKD RPNIIYSWAGGVLKAQIEAGVLEDITDQVKGYSDSITPAALAAFTDKGRVYGLPIALSQVGFVCNRELMAKAKVDPAVIK TWDDLLTAVKTLKAAGVTPIVVGGADKWPLHFYWTHLAVRLGGKPAFEAALRGENGGFAADTFVKSGELFKQLVDLQPFQ NGFLGFKNPQAVGYFGDGKAAMTLAISSVYNLQRALAADKVGLGEDKICWFDFPTVADGKGAPTDTLGGITGWLVTKGSP KEAVDFLKYFISKDVQTRLAAGNFIVPVVQGAEAGLTNSFMKQIAANLAKSNYHQNFYDQSLGPSVGRVVNDVSAEIAGG SMSPQDAAKAIEAARKQGN
Specific function: Probably part of the binding-protein-dependent transport system yurMNO [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: 660 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 720 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase,
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 44725; Mature: 44725
Theoretical pI: Translated: 8.40; Mature: 8.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLLAKLGLAAAACLVGASAVLADTTVKWLHIEVNPAQVKIWEEVARAYEASHPGTKIEM CCHHHHHHHHHHHHHHCCHHHHHHCEEEEEEEEECHHHHHHHHHHHHHHHCCCCCCEEEE QFLENEAYKAKLPTILQSKDRPNIIYSWAGGVLKAQIEAGVLEDITDQVKGYSDSITPAA EEHHCCCHHHHCCHHHCCCCCCCEEEEECCCEEEEHHHHHHHHHHHHHHCCCCCCCCHHH LAAFTDKGRVYGLPIALSQVGFVCNRELMAKAKVDPAVIKTWDDLLTAVKTLKAAGVTPI HHHHCCCCCEEECCHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE VVGGADKWPLHFYWTHLAVRLGGKPAFEAALRGENGGFAADTFVKSGELFKQLVDLQPFQ EECCCCCCCHHEEEEEHHHHCCCCHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCCCC NGFLGFKNPQAVGYFGDGKAAMTLAISSVYNLQRALAADKVGLGEDKICWFDFPTVADGK CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC GAPTDTLGGITGWLVTKGSPKEAVDFLKYFISKDVQTRLAAGNFIVPVVQGAEAGLTNSF CCCCHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHH MKQIAANLAKSNYHQNFYDQSLGPSVGRVVNDVSAEIAGGSMSPQDAAKAIEAARKQGN HHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MRLLAKLGLAAAACLVGASAVLADTTVKWLHIEVNPAQVKIWEEVARAYEASHPGTKIEM CCHHHHHHHHHHHHHHCCHHHHHHCEEEEEEEEECHHHHHHHHHHHHHHHCCCCCCEEEE QFLENEAYKAKLPTILQSKDRPNIIYSWAGGVLKAQIEAGVLEDITDQVKGYSDSITPAA EEHHCCCHHHHCCHHHCCCCCCCEEEEECCCEEEEHHHHHHHHHHHHHHCCCCCCCCHHH LAAFTDKGRVYGLPIALSQVGFVCNRELMAKAKVDPAVIKTWDDLLTAVKTLKAAGVTPI HHHHCCCCCEEECCHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE VVGGADKWPLHFYWTHLAVRLGGKPAFEAALRGENGGFAADTFVKSGELFKQLVDLQPFQ EECCCCCCCHHEEEEEHHHHCCCCHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCCCC NGFLGFKNPQAVGYFGDGKAAMTLAISSVYNLQRALAADKVGLGEDKICWFDFPTVADGK CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC GAPTDTLGGITGWLVTKGSPKEAVDFLKYFISKDVQTRLAAGNFIVPVVQGAEAGLTNSF CCCCHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHH MKQIAANLAKSNYHQNFYDQSLGPSVGRVVNDVSAEIAGGSMSPQDAAKAIEAARKQGN HHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; maltose [Periplasm]; H2O [C]
Specific reaction: ATP + maltose [Periplasm] + H2O = ADP + phosphate + maltose [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]